RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CRELD2Q6UXH1 353 aaPredicted RBP14.77□□□□□ -0.05
TCOF1-215ENST00000515516 FOXD4L3Q6VB84 417 aaPredicted RBP14.77□□□□□ -0.05
TCOF1-215ENST00000515516 CCDC105Q8IYK2 499 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 KCNG4Q8TDN1 519 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 DHX58Q96C10 678 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 SAAL1Q96ER3 474 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 ZNF560Q96MR9 790 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 PYM1Q9BRP8 204 aaKnown RBP14.77□□□□□ -0.05
TCOF1-215ENST00000515516 IKZF4Q9H2S9 585 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 ZFP14Q9HCL3 533 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 FAM13BQ9NYF5 915 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 RBAKQ9NYW8 714 aaPredicted RBP14.77□□□□□ -0.05
TCOF1-215ENST00000515516 CFAP45Q9UL16 551 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 YIPF1Q9Y548 306 aa14.77□□□□□ -0.05
TCOF1-215ENST00000515516 C2orf16Q68DN1 1984 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 KIAA0391O15091 583 aaKnown RBP14.76□□□□□ -0.05
TCOF1-215ENST00000515516 SPTLC1O15269 473 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 EXTL3O43909 919 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 PRPF6O94906 941 aaKnown RBP14.76□□□□□ -0.05
TCOF1-215ENST00000515516 CYP11A1P05108 521 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 TUFMP49411 452 aaKnown RBP14.76□□□□□ -0.05
TCOF1-215ENST00000515516 CASP5P51878 434 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 ASIC1P78348 528 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 PRKCQQ04759 706 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 MLF2Q15773 248 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-215ENST00000515516 ATL3Q6DD88 541 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 BRSK2Q8IWQ3 736 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 HS6ST3Q8IZP7 471 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 FAM200AQ8TCP9 573 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 ELSPBP1Q96BH3 223 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 TCEAL4Q96EI5 215 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 GPR88Q9GZN0 384 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 SLITRK6Q9H5Y7 841 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 CEP72Q9P209 647 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 SLC27A5Q9Y2P5 690 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 ASB3Q9Y575 518 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 ZNF318Q5VUA4 2279 aa14.76□□□□□ -0.05
TCOF1-215ENST00000515516 TRIOO75962 3097 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 ZDBF2Q9HCK1 2354 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 GOLGA8IPA6NC78 632 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 GOLGA8JA6NMD2 632 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 KPNA7A9QM74 516 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 FGF19O95750 216 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 F13A1P00488 732 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 ME1P48163 572 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 STARD6P59095 220 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 SMARCB1Q12824 385 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 VEPH1Q14D04 833 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 ANGPT1Q15389 498 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 TAF12Q16514 161 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 SLC39A12Q504Y0 691 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 FAM78AQ5JUQ0 283 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 TANGO2Q6ICL3 276 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 CENPPQ6IPU0 288 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 ITIH5Q86UX2 942 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 EFCAB13Q8IY85 973 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 ATAD1Q8NBU5 361 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 SPRYD3Q8NCJ5 442 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 PCIF1Q9H4Z3 704 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 MAGEF1Q9HAY2 307 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 KBTBD4Q9NVX7 518 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 HSFX1Q9UBD0 423 aa14.75□□□□□ -0.05
TCOF1-215ENST00000515516 VWA8A3KMH1 1905 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 MYO10Q9HD67 2058 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 KANSL1LA0AUZ9 987 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 MTMR11A4FU01 709 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 GFRA3O60609 400 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 DCNP07585 359 aaKnown RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 KRT19P08727 400 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 CCR2P41597 374 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 EPHA5P54756 1037 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 E2F4Q16254 413 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 MGAT5BQ3V5L5 792 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 WSCD1Q658N2 575 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 SHC4Q6S5L8 630 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 DCP1BQ8IZD4 617 aaKnown RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 GPD1LQ8N335 351 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 CSGALNACT2Q8N6G5 542 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 C2orf15Q8WU43 125 aaKnown RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 SMARCD2Q92925 531 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 TMEM209Q96SK2 561 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 SEPT5Q99719 369 aaPredicted RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 CBWD1Q9BRT8 395 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 TRMT61BQ9BVS5 477 aaKnown RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 TRIM9Q9C026 710 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 ZCWPW1Q9H0M4 648 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 BRD9Q9H8M2 597 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 AGAP1Q9UPQ3 857 aa14.74□□□□□ -0.05
TCOF1-215ENST00000515516 MTCL1Q9Y4B5 1905 aaKnown RBP14.74□□□□□ -0.05
TCOF1-215ENST00000515516 ZNF233A6NK53 670 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 EIF3DO15371 548 aaKnown RBP eCLIP14.73□□□□□ -0.05
TCOF1-215ENST00000515516 POLR2DO15514 142 aaKnown RBP14.73□□□□□ -0.05
TCOF1-215ENST00000515516 HUS1O60921 280 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 VNN2O95498 520 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 ITGB3P05106 788 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 TMEM191BP0C7N4 346 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 GJA1P17302 382 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 POLR2BP30876 1174 aaKnown RBP14.73□□□□□ -0.05
TCOF1-215ENST00000515516 RBP5P82980 135 aa14.73□□□□□ -0.05
TCOF1-215ENST00000515516 TSPY1Q01534 308 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms