RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 LETM1O95202 739 aaPredicted RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 CST3P01034 146 aaPredicted RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 KCNA5P22460 613 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 OR1D2P34982 312 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 LTBRP36941 435 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 NCOA4Q13772 614 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 SGSM1Q2NKQ1 1148 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 KLHL40Q2TBA0 621 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 SKOR2Q2VWA4 1001 aaPredicted RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 PUS10Q3MIT2 529 aaKnown RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 CTXN3Q4LDR2 81 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 C1orf220Q5T0J3 134 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 TDRD10Q5VZ19 366 aaKnown RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 SLC8B1Q6J4K2 584 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 LLGL2Q6P1M3 1020 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 RTL10Q7L3V2 364 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 THEM5Q8N1Q8 247 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 TOP6BLQ8N6T0 577 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 TAF4BQ92750 862 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 FAM84AQ96KN4 292 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 SRRTQ9BXP5 876 aaKnown RBP15.34■□□□□ 0.05
NUP54-216ENST00000514901 PLEKHA4Q9H4M7 779 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 VRTNQ9H8Y1 702 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 TMEM8AQ9HCN3 771 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 ANO10Q9NW15 660 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 MAFFQ9ULX9 164 aa15.34■□□□□ 0.05
NUP54-216ENST00000514901 LINC01565O15544 149 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 GLP2RO95838 553 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 CCDC192P0DO97 292 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 RPL17P18621 184 aaKnown RBP15.33■□□□□ 0.04
NUP54-216ENST00000514901 MRPS5P82675 430 aaKnown RBP15.33■□□□□ 0.04
NUP54-216ENST00000514901 TPD52L1Q16890 204 aaPredicted RBP15.33■□□□□ 0.04
NUP54-216ENST00000514901 DPCR1Q3MIW9 517 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 LEXMQ3ZCV2 418 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 CCDC40Q4G0X9 1142 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 KRT39Q6A163 491 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 ANKRD54Q6NXT1 300 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 LILRA6Q6PI73 481 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 C15orf39Q6ZRI6 1047 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 PALB2Q86YC2 1186 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 VN1R2Q8NFZ6 395 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 CLEC1BQ9P126 229 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 TMEM63CQ9P1W3 806 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 FBXL5Q9UKA1 691 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 TIMM13Q9Y5L4 95 aaPredicted RBP15.33■□□□□ 0.04
NUP54-216ENST00000514901 SNX9Q9Y5X1 595 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 CDY1Q9Y6F8 540 aa15.33■□□□□ 0.04
NUP54-216ENST00000514901 TGM5O43548 720 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TBX10O75333 385 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TRIM49P0CI25 452 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TRIM49CP0CI26 452 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 P4HA1P13674 534 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 EPCAMP16422 314 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 GCLMP48507 274 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 LHX1P48742 406 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 MARSP56192 900 aaKnown RBP15.32■□□□□ 0.04
NUP54-216ENST00000514901 MYL6P60660 151 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TNNC1P63316 161 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 PPP3CAQ08209 521 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 UVSSAQ2YD98 709 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 WDR72Q3MJ13 1102 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TCERG1LQ5VWI1 586 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 WSCD1Q658N2 575 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 TPGS2Q68CL5 300 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 CAVIN1Q6NZI2 390 aaKnown RBP15.32■□□□□ 0.04
NUP54-216ENST00000514901 CCDC150Q8NCX0 1101 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 ZNF461Q8TAF7 563 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 MSLNLQ96KJ4 702 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 XYLT2Q9H1B5 865 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 PRDM6Q9NQX0 595 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 CD207Q9UJ71 328 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 BARX2Q9UMQ3 279 aaPredicted RBP15.32■□□□□ 0.04
NUP54-216ENST00000514901 FAM50BQ9Y247 325 aa15.32■□□□□ 0.04
NUP54-216ENST00000514901 PMM2O15305 246 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 ADAM12O43184 909 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 ABLIM3O94929 683 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 MXI1P50539 228 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 ITIH3Q06033 890 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 DLX2Q07687 328 aaPredicted RBP15.31■□□□□ 0.04
NUP54-216ENST00000514901 SMARCB1Q12824 385 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 STX1AQ16623 288 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 ZNF699Q32M78 642 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 DCAF17Q5H9S7 520 aaPredicted RBP15.31■□□□□ 0.04
NUP54-216ENST00000514901 ZNF667Q5HYK9 610 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 SCARA3Q6AZY7 606 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 RSPO2Q6UXX9 243 aaPredicted RBP15.31■□□□□ 0.04
NUP54-216ENST00000514901 CYP26C1Q6V0L0 522 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 LIMS2Q7Z4I7 341 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 GLYCTKQ8IVS8 523 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 PDCL2Q8N4E4 241 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 KREMEN2Q8NCW0 462 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 MMS19Q96T76 1030 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 IMPG2Q9BZV3 1241 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 MAN1C1Q9NR34 630 aa15.31■□□□□ 0.04
NUP54-216ENST00000514901 MTCL1Q9Y4B5 1905 aaKnown RBP15.31■□□□□ 0.04
NUP54-216ENST00000514901 SPTBN5Q9NRC6 3674 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 SPDYE4A6NLX3 237 aa15.3■□□□□ 0.04
NUP54-216ENST00000514901 H3BQ06 376 aaPredicted RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 N4BP1O75113 896 aaKnown RBP15.3■□□□□ 0.04
NUP54-216ENST00000514901 TACC1O75410 805 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms