RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 LDHAP00338 332 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 OATP04181 439 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 P4HBP07237 508 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 VEGFAP15692 232 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 MTFR1Q15390 333 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 C9orf131Q5VYM1 1079 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 KIAA1841Q6NSI8 718 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 TXNRD3Q86VQ6 643 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 EGFL6Q8IUX8 553 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 GALNT4Q8N4A0 578 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 HDAC11Q96DB2 347 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 KLHL4Q9C0H6 718 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 WFS1O76024 890 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 PON1P27169 355 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 MAP4P27816 1152 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 SFNP31947 248 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 GEMIN4P57678 1058 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ITKQ08881 620 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 MAPK6Q16659 721 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 RNF43Q68DV7 783 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 CDC42EP5Q6NZY7 148 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 C3orf62Q6ZUJ4 267 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ARID3BQ8IVW6 561 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 KIAA2013Q8IYS2 634 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 HSD3B7Q9H2F3 369 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 RPAP3Q9H6T3 665 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 OLFML3Q9NRN5 406 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 FIS1Q9Y3D6 152 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 GRIN2DO15399 1336 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 GNGT2O14610 69 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 FXR2P51116 673 aaKnown RBP eCLIP11.8□□□□□ -0.523e-7■■■■□ 22.9
TCOF1-211ENST00000513346 KPNA2P52292 529 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 HDAC4P56524 1084 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 E2F7Q96AV8 911 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 VPS11Q9H270 941 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 LRRC4Q9HBW1 653 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 WDR70Q9NW82 654 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 DDX56Q9NY93 547 aaKnown RBP11.8□□□□□ -0.52
TCOF1-211ENST00000513346 ORC6Q9Y5N6 252 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 SHPRHQ149N8 1683 aa11.8□□□□□ -0.52
TCOF1-211ENST00000513346 XPO1O14980 1071 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 MED7O43513 233 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 CBX6O95503 412 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 CALB1P05937 261 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SKIV2L2P42285 1042 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 ADARP55265 1226 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 RCOR2Q8IZ40 523 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 KLHL23Q8NBE8 558 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 TMEM35BQ8NCS4 154 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SPATA20Q8TB22 786 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 KIFC3Q9BVG8 833 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 OSGEPQ9NPF4 335 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SATB2Q9UPW6 733 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 ARHGEF37A1IGU5 675 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 ZNF200P98182 395 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 PTK7Q13308 1070 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 TTLL4Q14679 1199 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 GJB7Q6PEY0 223 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 C16orf86Q6ZW13 317 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 ENOSF1Q7L5Y1 443 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 PASD1Q8IV76 773 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 EZH1Q92800 747 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 GID8Q9NWU2 228 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 GABBR1Q9UBS5 961 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SNX5Q9Y5X3 404 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SH3BP5O60239 455 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 PRPSAP2O60256 369 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 NDUFB10O96000 172 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 MYL3P08590 195 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 RPL21P46778 160 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 RPS6KA3P51812 740 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SWSAP1Q6NVH7 229 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SCARA5Q6ZMJ2 495 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 TRIM72Q6ZMU5 477 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 LRRC6Q86X45 466 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 MAB21L3Q8N8X9 362 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 PSPC1Q8WXF1 523 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 TBC1D10AQ9BXI6 508 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 CYP26B1Q9NR63 512 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 FAM217BQ9NTX9 383 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 BAG5Q9UL15 447 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 RPL26L1Q9UNX3 145 aaKnown RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 COMMD3-BMI1R4GMX3 469 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 MYO5BQ9ULV0 1848 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 PSMG1O95456 288 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 NUDT17P0C025 328 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 GMPSP49915 693 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-211ENST00000513346 NEK2P51955 445 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 COPAP53621 1224 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 TMPRSS6Q8IU80 811 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 DNAAF3Q8N9W5 541 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 CNBD2Q96M20 576 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 SIK3Q9Y2K2 1263 aa11.79□□□□□ -0.52
TCOF1-211ENST00000513346 GPR75-ASB3A0A0A6YYF3 556 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 ZBTB24O43167 697 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-211ENST00000513346 SHBGP04278 402 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 KRT7P08729 469 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 MYL2P10916 166 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PSEN1P49768 467 aa11.78□□□□□ -0.52
TCOF1-211ENST00000513346 PRAMEP78395 509 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms