RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CPEP16870 476 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 NDUFB7P17568 137 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 SOX5P35711 763 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 MMP13P45452 471 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 POLGP54098 1239 aaPredicted RBP3.94□□□□□ -1.78
NUP54-208ENST00000508604 TFF2Q03403 129 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 MIGA2Q7L4E1 593 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 CFAP52Q8N1V2 620 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 TMX3Q96JJ7 454 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 ZNF48Q96MX3 618 aaPredicted RBP3.94□□□□□ -1.78
NUP54-208ENST00000508604 TPSD1Q9BZJ3 242 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 ANLNQ9NQW6 1124 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 JKAMPQ9P055 326 aa3.94□□□□□ -1.78
NUP54-208ENST00000508604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.94□□□□□ -1.78
NUP54-208ENST00000508604 A0A0B4J269 797 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 WDR27A2RRH5 827 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 F5H697 171 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 JTBO76095 146 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 DRD4P21917 467 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 MPGP29372 298 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 POU6F2P78424 691 aaPredicted RBP3.93□□□□□ -1.78
NUP54-208ENST00000508604 TUBB3Q13509 450 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 CT47A1Q5JQC4 288 aaPredicted RBP3.93□□□□□ -1.78
NUP54-208ENST00000508604 SLC17A8Q8NDX2 589 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 NSUN7Q8NE18 718 aaKnown RBP3.93□□□□□ -1.78
NUP54-208ENST00000508604 IL17RDQ8NFM7 739 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 OR2I1PQ8NGU4 316 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 KLHL32Q96NJ5 620 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 CCM2LQ9NUG4 571 aaPredicted RBP3.93□□□□□ -1.78
NUP54-208ENST00000508604 INTUQ9ULD6 942 aa3.93□□□□□ -1.78
NUP54-208ENST00000508604 PPP6CO00743 305 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 CYP2D6P10635 497 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 ZFXP17010 805 aaPredicted RBP3.92□□□□□ -1.78
NUP54-208ENST00000508604 TKTP29401 623 aaKnown RBP3.92□□□□□ -1.78
NUP54-208ENST00000508604 GPR3P46089 330 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 MTNR1BP49286 362 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 BMPR2Q13873 1038 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 TAPT1Q6NXT6 567 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 ZNF365Q70YC5 407 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 SLC29A4Q7RTT9 530 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 RNF180Q86T96 592 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 AMOTL1Q8IY63 956 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 DPF2Q92785 391 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 TRIB1Q96RU8 372 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 WACQ9BTA9 647 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 CAAP1Q9H8G2 361 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 SH3BP4Q9P0V3 963 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 GPR45Q9Y5Y3 372 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 WASHC2AQ641Q2 1341 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 ADGRA2Q96PE1 1338 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 CNTNAP2Q9UHC6 1331 aa3.92□□□□□ -1.78
NUP54-208ENST00000508604 PPEF2O14830 753 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 NXPH3O95157 252 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 ANXA1P04083 346 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 FAM163BP0C2L3 166 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 SLC6A4P31645 630 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 HNRNPMP52272 730 aaKnown RBP eCLIP3.91□□□□□ -1.78
NUP54-208ENST00000508604 TMPRSS15P98073 1019 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 MC2RQ01718 297 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 SLC18B1Q6NT16 456 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 ZNF517Q6ZMY9 492 aaPredicted RBP3.91□□□□□ -1.78
NUP54-208ENST00000508604 ZNF551Q7Z340 670 aaPredicted RBP3.91□□□□□ -1.78
NUP54-208ENST00000508604 ZNF804AQ7Z570 1209 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 FAM9AQ8IZU1 332 aaPredicted RBP3.91□□□□□ -1.78
NUP54-208ENST00000508604 DCBLD1Q8N8Z6 715 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 FANCBQ8NB91 859 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 NRG4Q8WWG1 115 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 WASF1Q92558 559 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 FKBP10Q96AY3 582 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 RGMAQ96B86 450 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 HMCESQ96FZ2 354 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 SPATA31A3Q5VYP0 1347 aa3.91□□□□□ -1.78
NUP54-208ENST00000508604 VWC2LB2RUY7 222 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 SLC43A1O75387 559 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 LATS1O95835 1130 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 KRTAP5-9P26371 169 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 CDC42EP1Q00587 391 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 LAMB3Q13751 1172 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 KLHL22Q53GT1 634 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 TEDDM1Q5T9Z0 273 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 PXDC1Q5TGL8 231 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 GADL1Q6ZQY3 521 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 UBR7Q8N806 425 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 ATRIPQ8WXE1 791 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 TBC1D5Q92609 795 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 SLKQ9H2G2 1235 aaPredicted RBP3.9□□□□□ -1.78
NUP54-208ENST00000508604 VTA1Q9NP79 307 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 ARHGEF3Q9NR81 526 aa3.9□□□□□ -1.78
NUP54-208ENST00000508604 POLRMTO00411 1230 aaKnown RBP3.9□□□□□ -1.79
NUP54-208ENST00000508604 SOAT2O75908 522 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 TUBB4AP04350 444 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 RHOP08100 348 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 SNHG28P0DPA3 235 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 ALDH9A1P49189 494 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 NDUFV1P49821 464 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.79
NUP54-208ENST00000508604 PROSER3Q2NL68 480 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 PRAMEF17Q5VTA0 474 aa3.9□□□□□ -1.79
NUP54-208ENST00000508604 CRELD2Q6UXH1 353 aaPredicted RBP3.9□□□□□ -1.79
NUP54-208ENST00000508604 STRA8Q7Z7C7 330 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms