RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ISM2Q6H9L7 571 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 CYP26C1Q6V0L0 522 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 THEM5Q8N1Q8 247 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 LRRC52Q8N7C0 313 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 SLC7A14Q8TBB6 771 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 SMG7Q92540 1137 aaKnown RBP17.17■□□□□ 0.34
LIME1-209ENST00000494776 POMKQ9H5K3 350 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 NR2E1Q9Y466 385 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 PTPRJQ12913 1337 aa17.17■□□□□ 0.34
LIME1-209ENST00000494776 WDR27A2RRH5 827 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 OR6C75A6NL08 312 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 HUS1O60921 280 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 PHACTR2O75167 634 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 CLSTN1O94985 981 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 PRCPP42785 496 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 CASP4P49662 377 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 ADAM9Q13443 819 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 TRPC3Q13507 836 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 STIM1Q13586 685 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 UVSSAQ2YD98 709 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 TPGS2Q68CL5 300 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 TRAPPC11Q7Z392 1133 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 SPATA20Q8TB22 786 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 TMEM174Q8WUU8 243 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 TSG101Q99816 390 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 PRKD2Q9BZL6 878 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 CYP4F11Q9HBI6 524 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 SIX4Q9UIU6 781 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 POLIQ9UNA4 740 aa17.16■□□□□ 0.34
LIME1-209ENST00000494776 C19orf67A6NJJ6 358 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 CCL16O15467 120 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 XYLBO75191 536 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 ABLIM3O94929 683 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 CYP11A1P05108 521 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 HNRNPA1P09651 372 aaKnown RBP eCLIP17.15■□□□□ 0.34
LIME1-209ENST00000494776 ATF2P15336 505 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 ADCY1Q08828 1119 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 BIRC3Q13489 604 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 NFIL3Q16649 462 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 WSCD1Q658N2 575 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 HPDLQ96IR7 371 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 GBP4Q96PP9 640 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 CD320Q9NPF0 282 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 MAN1B1Q9UKM7 699 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 SNX9Q9Y5X1 595 aa17.15■□□□□ 0.34
LIME1-209ENST00000494776 LRG1P02750 347 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 OR4Q2P0C623 313 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 KRT13P13646 458 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 PSMC2P35998 433 aaKnown RBP17.14■□□□□ 0.33
LIME1-209ENST00000494776 AP3M2P53677 418 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 CAMK4Q16566 473 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 EDRF1Q3B7T1 1238 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 RTL10Q7L3V2 364 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 FEZF2Q8TBJ5 459 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 PARD3BQ8TEW8 1205 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 ZNF707Q96C28 371 aaPredicted RBP17.14■□□□□ 0.33
LIME1-209ENST00000494776 BORCS6Q96GS4 357 aa17.14■□□□□ 0.33
LIME1-209ENST00000494776 AFF4Q9UHB7 1163 aaKnown RBP17.14■□□□□ 0.33
LIME1-209ENST00000494776 LRRIQ3A6PVS8 624 aaPredicted RBP17.13■□□□□ 0.33
LIME1-209ENST00000494776 LOC730098B7Z3J9 87 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 BIN1O00499 593 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 PSMA7O14818 248 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 CETN3O15182 167 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 HOXA9P31269 272 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 PPP1R2P41236 205 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 COBLL1Q53SF7 1204 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 SCARA3Q6AZY7 606 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 RNF19BQ6ZMZ0 732 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 FAM186BQ8IYM0 893 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 PDCL2Q8N4E4 241 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 TDRD5Q8NAT2 981 aaKnown RBP17.13■□□□□ 0.33
LIME1-209ENST00000494776 CXorf38Q8TB03 319 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 TMC2Q8TDI7 906 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 ZNF516Q92618 1163 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 ACSF2Q96CM8 615 aaPredicted RBP17.13■□□□□ 0.33
LIME1-209ENST00000494776 PGLYRP2Q96PD5 576 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 MMS19Q96T76 1030 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 C1QTNF1Q9BXJ1 281 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 RHOBTB2Q9BYZ6 727 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 WDR6Q9NNW5 1121 aaKnown RBP17.13■□□□□ 0.33
LIME1-209ENST00000494776 GDAP2Q9NXN4 497 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 MAFFQ9ULX9 164 aa17.13■□□□□ 0.33
LIME1-209ENST00000494776 MAPK13O15264 365 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 AKAP3O75969 853 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 CST3P01034 146 aaPredicted RBP17.12■□□□□ 0.33
LIME1-209ENST00000494776 EPB41P11171 864 aaKnown RBP17.12■□□□□ 0.33
LIME1-209ENST00000494776 VAMP7P51809 220 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 GPR17Q13304 367 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 ZCWPW2Q504Y3 356 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 CENPPQ6IPU0 288 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 CLEC17AQ6ZS10 378 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 INTS8Q75QN2 995 aaKnown RBP17.12■□□□□ 0.33
LIME1-209ENST00000494776 OTOP3Q7RTS5 596 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 GRASPQ7Z6J2 395 aaPredicted RBP17.12■□□□□ 0.33
LIME1-209ENST00000494776 TCEAL8Q8IYN2 117 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 ADSSL1Q8N142 457 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 TMEM86AQ8N2M4 240 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 ELMOD1Q8N336 334 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 TOP6BLQ8N6T0 577 aa17.12■□□□□ 0.33
LIME1-209ENST00000494776 PLEKHO2Q8TD55 490 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms