RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 GPR62Q9BZJ7 368 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 RXFP1Q9HBX9 757 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 KCND2Q9NZV8 630 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 DLGAP2Q9P1A6 1054 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 CACNG4Q9UBN1 327 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 DPP7Q9UHL4 492 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 SSX2IPQ9Y2D8 614 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 IPPQ9Y573 584 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 NUMBLQ9Y6R0 609 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 SDK1Q7Z5N4 2213 aa9.56□□□□□ -0.88
USP4-213ENST00000488520 GREB1Q4ZG55 1949 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 GPR179Q6PRD1 2367 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 TGM5O43548 720 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 USO1O60763 962 aaKnown RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 KINO60870 393 aaKnown RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 ERLIN2O94905 339 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 ZNF202O95125 648 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PFKFB1P16118 471 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 RARRES1P49788 294 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 SMTNP53814 917 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 GPC5P78333 572 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 NTHL1P78549 312 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 DSG1Q02413 1049 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 NCBP1Q09161 790 aaKnown RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 SNW1Q13573 536 aaKnown RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 HTR4Q13639 388 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 TFDP1Q14186 410 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 MXD4Q14582 209 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 ECM1Q16610 540 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 RSPO4Q2I0M5 234 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 MAP7D1Q3KQU3 841 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PHLDB3Q6NSJ2 640 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 CYP26C1Q6V0L0 522 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 CLEC17AQ6ZS10 378 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 USP49Q70CQ1 688 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PRICKLE2Q7Z3G6 844 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 GRASPQ7Z6J2 395 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 GPBP1Q86WP2 473 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 CDR2LQ86X02 465 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 RNF168Q8IYW5 571 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 PLPP7Q8NBV4 271 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PJA1Q8NG27 643 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PSPC1Q8WXF1 523 aaKnown RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 RUBCNQ92622 972 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 FGF14Q92915 247 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 NXPE3Q969Y0 559 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PNMA5Q96PV4 448 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 ZHX3Q9H4I2 956 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 PLEKHA4Q9H4M7 779 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 MAGEF1Q9HAY2 307 aa9.55□□□□□ -0.88
USP4-213ENST00000488520 WRAP73Q9P2S5 460 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 KMT2BQ9UMN6 2715 aaPredicted RBP9.55□□□□□ -0.88
USP4-213ENST00000488520 EML5Q05BV3 1969 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 F5P12259 2224 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 ANHXE9PGG2 379 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 TBCAO75347 108 aaKnown RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 KRT37O76014 449 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 EFEMP2O95967 443 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 SLFN14P0C7P3 912 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 CYP11B2P19099 503 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 CD72P21854 359 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 AKAP5P24588 427 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 AFMP43652 599 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 NDUFA8P51970 172 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 DSC1Q08554 894 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 UBXN2BQ14CS0 331 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 EMC2Q15006 297 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 PPP2R5AQ15172 486 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 TMEM119Q4V9L6 283 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 RINT1Q6NUQ1 792 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 FUT10Q6P4F1 479 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 PRSS55Q6UWB4 352 aaPredicted RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 PARM1Q6UWI2 310 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 MAML2Q8IZL2 1156 aaPredicted RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 SUMF1Q8NBK3 374 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 HASPINQ8TF76 798 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 KIFAP3Q92845 792 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 DRC1Q96MC2 740 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 CNTNAP3BQ96NU0 1288 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 COLEC11Q9BWP8 271 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 CNTNAP3Q9BZ76 1288 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 TRIM6Q9C030 488 aaPredicted RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 ALG2Q9H553 416 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 DHX33Q9H6R0 707 aaKnown RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 UBN1Q9NPG3 1134 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 RAB6BQ9NRW1 208 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 CHST7Q9NS84 486 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 SPATA6Q9NWH7 488 aaPredicted RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP4-213ENST00000488520 KLK14Q9P0G3 267 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 NCDNQ9UBB6 729 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 SERTAD1Q9UHV2 236 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 POLIQ9UNA4 740 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 MTF2Q9Y483 593 aaPredicted RBP9.54□□□□□ -0.88
USP4-213ENST00000488520 DENND4CQ5VZ89 1909 aa9.54□□□□□ -0.88
USP4-213ENST00000488520 EPG5Q9HCE0 2579 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 TCHHQ07283 1943 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 ACACBO00763 2458 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 CCDC169A6NNP5 214 aa9.53□□□□□ -0.88
USP4-213ENST00000488520 INO80B-WBP1J3KQ70 363 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms