RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ZNF28P17035 718 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 HDCP19113 662 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 CASRP41180 1078 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 TECP42680 631 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 PHKA1P46020 1223 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 ALDH1A3P47895 512 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 SOX8P57073 446 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 BPIFB4P59827 614 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 KRTAP10-2P60368 255 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 ATP2C1P98194 919 aaPredicted RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 CREMQ03060 361 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 EXOSC9Q06265 439 aaKnown RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 Q6ZUG5 572 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 PDZD4Q76G19 769 aaPredicted RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 GPR155Q7Z3F1 870 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 FAM90A1Q86YD7 464 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 SYTL1Q8IYJ3 562 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 NKAPQ8N5F7 415 aaKnown RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 MYCT1Q8N699 235 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 PAF1Q8N7H5 531 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 CASKIN2Q8WXE0 1202 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 ARL8AQ96BM9 186 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 SLC7A6OSQ96CW6 309 aaPredicted RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 NAP1L4Q99733 375 aaKnown RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 BDH2Q9BUT1 245 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 CARD11Q9BXL7 1154 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 STK32BQ9NY57 414 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 MAGED2Q9UNF1 606 aaPredicted RBP4.82□□□□□ -1.64
PTCD3-216ENST00000487043 PCDHGB3Q9Y5G1 929 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 ABCA6Q8N139 1617 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 DIP2CQ9Y2E4 1556 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 FAM135AQ9P2D6 1515 aa4.82□□□□□ -1.64
PTCD3-216ENST00000487043 YEATS2Q9ULM3 1422 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 ZMYM3Q14202 1370 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 KANK1Q14678 1352 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 BCORL1Q5H9F3 1711 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 TBC1D4O60343 1298 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 CYP1A1P04798 512 aaPredicted RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 SBK3P0C264 359 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 EN2P19622 333 aaPredicted RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 RPL13P26373 211 aaKnown RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 PIK3CGP48736 1102 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 BIRC3Q13489 604 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 STARD3Q14849 445 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 ZXDCQ2QGD7 858 aaPredicted RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 ARL13BQ3SXY8 428 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 SPATS1Q496A3 300 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 CCDC38Q502W7 563 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 AFMIDQ63HM1 303 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 GGT6Q6P531 493 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 FRMD5Q7Z6J6 570 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 RNF152Q8N8N0 203 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 ANKRD53Q8N9V6 530 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 PCSK9Q8NBP7 692 aaKnown RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 OR5M3Q8NGP4 307 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 OR6B3Q8NGW1 331 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 PNISRQ8TF01 805 aaKnown RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 FNIP1Q8TF40 1166 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 BRI3BPQ8WY22 251 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 RPL10LQ96L21 214 aaKnown RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 SPATA25Q9BR10 227 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 KATNBL1Q9H079 304 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 C11orf54Q9H0W9 315 aaPredicted RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 TMPRSS5Q9H3S3 457 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 GJB4Q9NTQ9 266 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 MOCS1Q9NZB8 636 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 AFF4Q9UHB7 1163 aaKnown RBP4.81□□□□□ -1.64
PTCD3-216ENST00000487043 ZDHHC9Q9Y397 364 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 DEPDC5O75140 1603 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 IQGAP3Q86VI3 1631 aa4.81□□□□□ -1.64
PTCD3-216ENST00000487043 VWDEQ8N2E2 1590 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 REREQ9P2R6 1566 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 ADAMTS3O15072 1205 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 GRM6O15303 877 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TEX33O43247 280 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 JUNP05412 331 aaKnown RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 GNAI3P08754 354 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 VSIG10L2P0DP72 767 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 KCNC1P48547 511 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 HSPA7P48741 367 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 FLT3LGP49771 235 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 RENBPP51606 427 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 RPS16P62249 146 aaKnown RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 GNAI1P63096 354 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 NOMO3P69849 1222 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 ICA1Q05084 483 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 POU5F1BQ06416 359 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 SP140Q13342 867 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 USP10Q14694 798 aaKnown RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 ATP2B3Q16720 1220 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 CCDC93Q567U6 631 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 AGBL4Q5VU57 503 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 PGBD2Q6P3X8 592 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 LDHAL6AQ6ZMR3 332 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 ZNF572Q7Z3I7 529 aaPredicted RBP4.8□□□□□ -1.64
PTCD3-216ENST00000487043 SAPCD2Q86UD0 394 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 PLXDC1Q8IUK5 500 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 REXO1L1PQ8IX06 675 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 TXLNBQ8N3L3 684 aa4.8□□□□□ -1.64
PTCD3-216ENST00000487043 ZNF527Q8NB42 609 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms