RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LRRC36Q1X8D7 754 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 PRR5LQ6MZQ0 368 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TRIM65Q6PJ69 517 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 KRT35Q92764 455 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 NSL1Q96IY1 281 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 FRMPD1Q5SYB0 1578 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 ZNF235Q14590 738 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TKFCQ3LXA3 575 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 URGCPQ8TCY9 931 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 CMTM5Q96DZ9 223 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TEX13BQ9BXU2 312 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 MRPL1Q9BYD6 325 aaKnown RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 ITIH4Q14624 930 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 RNF219Q5W0B1 726 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 GPAT2Q6NUI2 795 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 MED15Q96RN5 788 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 NOD2Q9HC29 1040 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 CHORDC1Q9UHD1 332 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 ENO3P13929 434 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 ANO4Q32M45 955 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TAS2R42Q7RTR8 314 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 KIRREL3Q8IZU9 778 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TMA16Q96EY4 203 aaKnown RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 KAZALD1Q96I82 304 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 LBHD1Q9BQE6 289 aaPredicted RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 TXNP10599 105 aaKnown RBP17.22■□□□□ 0.35
COL7A1-210ENST00000487017 NPEPPSP55786 919 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 APPL2Q8NEU8 664 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 PI4K2AQ9BTU6 479 aa17.22■□□□□ 0.35
COL7A1-210ENST00000487017 IL18RAPO95256 599 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 GTF2H1P32780 548 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ABCE1P61221 599 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 DAB2P98082 770 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 USP10Q14694 798 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 E2F7Q96AV8 911 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 GRID1Q9ULK0 1009 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 STK25O00506 426 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 MYL2P10916 166 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 GFAPP14136 432 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 SPRP35270 261 aaPredicted RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 EPC2Q52LR7 807 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 CYB5D1Q6P9G0 228 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ACTRT1Q8TDG2 376 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 RUSC1Q9BVN2 902 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 SEMA6BQ9H3T3 888 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ANKEF1Q9NU02 776 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 GTPBP10A4D1E9 387 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 PSTPIP1O43586 416 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 RBP3P10745 1247 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 OTUD5Q96G74 571 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 NAF1Q96HR8 494 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 DACH2Q96NX9 599 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 SPON2Q9BUD6 331 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 NIF3L1Q9GZT8 377 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 TASP1Q9H6P5 420 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 CD163L1Q9NR16 1453 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ABCA9Q8IUA7 1624 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 MSH4O15457 936 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ZC3H12BQ5HYM0 836 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 SMIM5Q71RC9 77 aa17.21■□□□□ 0.35
COL7A1-210ENST00000487017 ABT1Q9ULW3 272 aaKnown RBP17.21■□□□□ 0.35
COL7A1-210ENST00000487017 LOC102724159A0A0B4J2E5 919 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 GPD1P21695 349 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PWP2Q15269 919 aaKnown RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 EPS8L3Q8TE67 593 aaKnown RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 SEPT1Q8WYJ6 367 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 GFM2Q969S9 779 aaKnown RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 TSPAN17Q96FV3 270 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 SMTNL2Q2TAL5 461 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 C4orf22Q6V702 233 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PRPF39Q86UA1 669 aaKnown RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 RMDN1Q96DB5 314 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 ZBED2Q9BTP6 218 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 ANKZF1Q9H8Y5 726 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 NDFIP2Q9NV92 336 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 ZNF212Q9UDV6 495 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 SEC24DO94855 1032 aaPredicted RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 DNAJC3Q13217 504 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 KCNH7Q9NS40 1196 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 EEF2KO00418 725 aaKnown RBP17.2■□□□□ 0.34
COL7A1-210ENST00000487017 HLA-DPA1P20036 260 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PPP4CP60510 307 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 FLOT2Q14254 428 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 KDELC2Q7Z4H8 507 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PTPRN2Q92932 1015 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PACSIN1Q9BY11 444 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 LACRTQ9GZZ8 138 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 NSMCE4AQ9NXX6 385 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 PKD2L2Q9NZM6 624 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 H3BQF6 201 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 MAN1A2O60476 641 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 BLVRAP53004 296 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 LZICQ8WZA0 190 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 ELMO2Q96JJ3 720 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 AIPL1Q9NZN9 384 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 CDYLQ9Y232 598 aa17.2■□□□□ 0.34
COL7A1-210ENST00000487017 ACBD5Q5T8D3 534 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-210ENST00000487017 SMARCAD1Q9H4L7 1026 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 TBX20Q9UMR3 447 aa17.19■□□□□ 0.34
COL7A1-210ENST00000487017 MYO1DO94832 1006 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms