RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CXorf38Q8TB03 319 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 SUSD6Q92537 303 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 TSG101Q99816 390 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 GTPBP4Q9BZE4 634 aaKnown RBP15.9■□□□□ 0.14
USP4-212ENST00000486549 GZF1Q9H116 711 aaPredicted RBP15.9■□□□□ 0.14
USP4-212ENST00000486549 PLEKHA4Q9H4M7 779 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 CD320Q9NPF0 282 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 LMBRD1Q9NUN5 540 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 FBXW11Q9UKB1 542 aa15.9■□□□□ 0.14
USP4-212ENST00000486549 CCDC195A0A1B0GUA6 201 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 ARHGEF37A1IGU5 675 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 WDR27A2RRH5 827 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 TRIM49BA6NDI0 452 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 LRRIQ3A6PVS8 624 aaPredicted RBP15.89■□□□□ 0.13
USP4-212ENST00000486549 TBC1D4O60343 1298 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 AKAP3O75969 853 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 C8AP07357 584 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 OR4Q2P0C623 313 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 SP100P23497 879 aaPredicted RBP15.89■□□□□ 0.13
USP4-212ENST00000486549 DLG4P78352 724 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 MYO1EQ12965 1108 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 ADAM9Q13443 819 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 BIRC3Q13489 604 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 NFIL3Q16649 462 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 COBLL1Q53SF7 1204 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 WSCD1Q658N2 575 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 SLC8B1Q6J4K2 584 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 KLHL10Q6JEL2 608 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 METTL23Q86XA0 190 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 ADSSL1Q8N142 457 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 LRRC52Q8N7C0 313 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 SLC7A14Q8TBB6 771 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 PARD3BQ8TEW8 1205 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 HDAC7Q8WUI4 952 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 TMEM174Q8WUU8 243 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 ZNF516Q92618 1163 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 EEF2KMTQ96G04 330 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 BORCS6Q96GS4 357 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 RIPOR3Q96MK2 946 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 NECTIN4Q96NY8 510 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 PHF7Q9BWX1 381 aaPredicted RBP15.89■□□□□ 0.13
USP4-212ENST00000486549 HCN4Q9Y3Q4 1203 aa15.89■□□□□ 0.13
USP4-212ENST00000486549 ARIH1Q9Y4X5 557 aaPredicted RBP15.89■□□□□ 0.13
USP4-212ENST00000486549 GOLGA6L22H0YM25 854 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 PSMA7O14818 248 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 PHACTR2O75167 634 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 OAZ2O95190 189 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 C1RP00736 705 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 CD44P16070 742 aaKnown RBP15.88■□□□□ 0.13
USP4-212ENST00000486549 BMP6P22004 513 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 MTHFRP42898 656 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 PMS1P54277 932 aaKnown RBP15.88■□□□□ 0.13
USP4-212ENST00000486549 TRPC3Q13507 836 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 MORC3Q14149 939 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 EDRF1Q3B7T1 1238 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 PPM1LQ5SGD2 360 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 ATAT1Q5SQI0 421 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 GPR149Q86SP6 731 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 FAM186BQ8IYM0 893 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 SMG7Q92540 1137 aaKnown RBP15.88■□□□□ 0.13
USP4-212ENST00000486549 HPDLQ96IR7 371 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 CLSTN2Q9H4D0 955 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 POMKQ9H5K3 350 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 PIDD1Q9HB75 910 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 DSEQ9UL01 958 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 SNX9Q9Y5X1 595 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 DENND4AQ7Z401 1863 aa15.88■□□□□ 0.13
USP4-212ENST00000486549 OR6C75A6NL08 312 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 PRR33A8MZF0 331 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CETN3O15182 167 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 HUS1O60921 280 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 ZMYND10O75800 440 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CYP11A1P05108 521 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 TRIM49P0CI25 452 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 TRIM49CP0CI26 452 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 KRT13P13646 458 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 ELF1P32519 619 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 PSMC2P35998 433 aaKnown RBP15.87■□□□□ 0.13
USP4-212ENST00000486549 VAMP7P51809 220 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 TDRD10Q5VZ19 366 aaKnown RBP15.87■□□□□ 0.13
USP4-212ENST00000486549 ANKRD40Q6AI12 368 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CENPPQ6IPU0 288 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CMASQ8NFW8 434 aaPredicted RBP15.87■□□□□ 0.13
USP4-212ENST00000486549 ZNF461Q8TAF7 563 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 RPGRIP1Q96KN7 1286 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 PGLYRP2Q96PD5 576 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 TMEM209Q96SK2 561 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 LRFN3Q9BTN0 628 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 MMRN2Q9H8L6 949 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CYP4F11Q9HBI6 524 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 ZDHHC7Q9NXF8 308 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 KIAA1468Q9P260 1216 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 L1RE1Q9UN81 338 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 POLIQ9UNA4 740 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 CTNND2Q9UQB3 1225 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 NR2E1Q9Y466 385 aa15.87■□□□□ 0.13
USP4-212ENST00000486549 PRRG1O14668 218 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 MAPK13O15264 365 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 CCL16O15467 120 aa15.86■□□□□ 0.13
USP4-212ENST00000486549 ABLIM3O94929 683 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms