RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PRKCEQ02156 737 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 CXCL17Q6UXB2 119 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 IFT20Q8IY31 132 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 DAW1Q8N136 415 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 MIPOL1Q8TD10 442 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 RAPGEF5Q92565 580 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 TRIM11Q96F44 468 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 NDNQ99608 321 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 IFT122Q9HBG6 1241 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 IL23AQ9NPF7 189 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 TLR3O15455 904 aaKnown RBP8.18□□□□□ -1.1
USP4-211ENST00000485450 ZNF286BP0CG31 522 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 MAEAQ7L5Y9 396 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 MRPL10Q7Z7H8 261 aaKnown RBP8.18□□□□□ -1.1
USP4-211ENST00000485450 LSM14AQ8ND56 463 aaKnown RBP8.18□□□□□ -1.1
USP4-211ENST00000485450 NT5C3AQ9H0P0 336 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 TMEM134Q9H6X4 195 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 MLXIPQ9HAP2 919 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 HESX1Q9UBX0 185 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 COL4A2P08572 1712 aa8.18□□□□□ -1.1
USP4-211ENST00000485450 POTEB3A0JP26 581 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 FAM189A1O60320 539 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 MARCH6O60337 910 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 C1RP00736 705 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 FAM153BP0C7A2 387 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 SELPP16109 830 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 HPDP32754 393 aaPredicted RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 CRYBB1P53674 252 aaPredicted RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 ITIH4Q14624 930 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 BMT2Q1RMZ1 405 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 FAM153CQ494X1 144 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 ARSHQ5FYA8 562 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 KANK3Q6NY19 840 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 POTEBQ6S5H4 581 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 EPM2AIP1Q7L775 607 aaPredicted RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 TBC1D1Q86TI0 1168 aaPredicted RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 LCA5Q86VQ0 697 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 LXNQ9BS40 222 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 PTPRHQ9HD43 1115 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 LIMA1Q9UHB6 759 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 FAM153AQ9UHL3 310 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 BOLA2-SMG1P6H3BVE0 249 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 NBNO60934 754 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 NQO1P15559 274 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 ATP2A2P16615 1042 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 BIRC3Q13489 604 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 TAF11Q15544 211 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 FBXO47Q5MNV8 452 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 CCDC197Q8NCU1 140 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 WHAMMQ8TF30 809 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 NCSTNQ92542 709 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 PYM1Q9BRP8 204 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 PLCB1Q9NQ66 1216 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 CHST12Q9NRB3 414 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 LRRC42Q9Y546 428 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 PTPRDP23468 1912 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 UBE4BO95155 1302 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 A0A087X0B3 334 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 EVI5O60447 810 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 DGAT1O75907 488 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 INSRRP14616 1297 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 ENPP1P22413 925 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 CDC25AP30304 524 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 YWHABP31946 246 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 HSPA9P38646 679 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 GPC3P51654 580 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 USP46P62068 366 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 MRPS6P82932 125 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 SMAD3P84022 425 aaKnown RBP8.17□□□□□ -1.1
USP4-211ENST00000485450 BFSP2Q13515 415 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 WDR78Q5VTH9 848 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 C8orf74Q6P047 294 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 CNKSR3Q6P9H4 555 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 MIER3Q7Z3K6 550 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 CPLX4Q7Z7G2 160 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 SLC7A5P1Q8MH63 180 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 DNAJC19Q96DA6 116 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 NACC1Q96RE7 527 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 DNAJC7Q99615 494 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 FZD8Q9H461 694 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 ARHGAP28Q9P2N2 729 aa8.17□□□□□ -1.1
USP4-211ENST00000485450 GOLGA6L10A0A0M3HER8 536 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 C5orf67F2Z3F1 127 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 ACTN4O43707 911 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 PSMC6P62333 389 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 PPP2R2AP63151 447 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 IER5Q5VY09 327 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 ZNF598Q86UK7 904 aaKnown RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 ANKS4BQ8N8V4 417 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 LINC01599Q8WXQ3 324 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 GABBR1Q9UBS5 961 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TMCO1Q9UM00 188 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TFR2Q9UP52 801 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 PLAAQ9Y263 795 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 TMEM247A6NEH6 219 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 MYZAPP0CAP1 466 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 SP100P23497 879 aaPredicted RBP8.16□□□□□ -1.1
USP4-211ENST00000485450 TMOD1P28289 359 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 AXLP30530 894 aa8.16□□□□□ -1.1
USP4-211ENST00000485450 CARSP49589 748 aaKnown RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms