RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 KXD1Q9BQD3 176 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 CUEDC2Q9H467 287 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 TRPV4Q9HBA0 871 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 ZFP14Q9HCL3 533 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 TRPV5Q9NQA5 729 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 MRPS17Q9Y2R5 130 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 PCDHB13Q9Y5F0 798 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 GVINP1Q7Z2Y8 2422 aa13.14□□□□□ -0.31
SQSTM1-207ENST00000481335 DENND4CQ5VZ89 1909 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 MYMKA6NI61 221 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 ANKRD63C9JTQ0 380 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 KIAA0391O15091 583 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 NCAM2O15394 837 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 PPP6R2O75170 966 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 NFICP08651 508 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 GARTP22102 1010 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 STAT6P42226 847 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 ALDH1A3P47895 512 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 ACOT2P49753 483 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 TAF6P49848 677 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 EPHB3P54753 998 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 ZC2HC1CQ53FD0 456 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 SPECC1Q5M775 1068 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 C1orf228Q6PIY5 440 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 STXBP4Q6ZWJ1 553 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 C1orf210Q8IVY1 113 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 SMARCD2Q92925 531 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 IRF7Q92985 503 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 SNX21Q969T3 373 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 FAM212AQ96EL1 285 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 MCRS1Q96EZ8 462 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 CLIC6Q96NY7 704 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 USP28Q96RU2 1077 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 IER2Q9BTL4 223 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 BCO2Q9BYV7 579 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 TNMDQ9H2S6 317 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 TMEM206Q9H813 350 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 CEP72Q9P209 647 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 ZMYM5Q9UJ78 669 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
SQSTM1-207ENST00000481335 MTMR11A4FU01 709 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 GCNT3O95395 438 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 FCARP24071 287 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 ADSSP30520 456 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 RPS9P46781 194 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 TUFMP49411 452 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 MLLT6P55198 1093 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 SNW1Q13573 536 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF528Q3MIS6 628 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 SV2CQ496J9 727 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 CENPPQ6IPU0 288 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 ITIH5Q86UX2 942 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 METTL23Q86XA0 190 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 BRSK2Q8IWQ3 736 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 LINC00301Q8NCQ3 95 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 SPATA18Q8TC71 538 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 PSMG2Q969U7 264 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 MSANTD3Q96H12 275 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 LTB4R2Q9NPC1 389 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 DPP3Q9NY33 737 aa13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 TIMM13Q9Y5L4 95 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-207ENST00000481335 MAN2B1O00754 1011 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 PPEF2O14830 753 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 MOSPD3O75425 235 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 VNN2O95498 520 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 YEATS4O95619 227 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 DCNP07585 359 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 GLULP15104 373 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 PSMC3P17980 439 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 CCR2P41597 374 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 GUCY2FP51841 1108 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 CEBPZQ03701 1054 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 DUSP4Q13115 394 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 VEPH1Q14D04 833 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 STK38Q15208 465 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 FAM78AQ5JUQ0 283 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 TANGO2Q6ICL3 276 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 CRELD2Q6UXH1 353 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF852Q6ZMS4 543 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 ASCL5Q7RTU5 278 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 FRMD5Q7Z6J6 570 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 TMC8Q8IU68 726 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 CCDC65Q8IXS2 484 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 THEM5Q8N1Q8 247 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 SPPL2BQ8TCT7 592 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 CACTINQ8WUQ7 758 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 TCEAL4Q96EI5 215 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF396Q96N95 335 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 TRMT61BQ9BVS5 477 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 LRRC3Q9BY71 257 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 FOXQ1Q9C009 403 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 BRD9Q9H8M2 597 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 MAGEF1Q9HAY2 307 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 FBXO4Q9UKT5 387 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 SPTBN4Q9H254 2564 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 ZNF292O60281 2723 aa13.11□□□□□ -0.31
SQSTM1-207ENST00000481335 KIF26AQ9ULI4 1882 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 KPNA7A9QM74 516 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 SPTLC1O15269 473 aa13.1□□□□□ -0.31
SQSTM1-207ENST00000481335 SPTLC2O15270 562 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms