RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 CLEC11AQ9Y240 323 aa13.83□□□□□ -0.2
SEC13-216ENST00000479868 SCINQ9Y6U3 715 aa13.83□□□□□ -0.2
SEC13-216ENST00000479868 GRIN2DO15399 1336 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 CCL15-CCL14A0A0B4J2E2 113 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 NFICP08651 508 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 CETPP11597 493 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 PHKA2P46019 1235 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 SNX1Q13596 522 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 CCL15Q16663 113 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 BRI3BPQ8WY22 251 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 CPB2Q96IY4 423 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 C16orf70Q9BSU1 422 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 EPB41L4BQ9H329 900 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 RPF1Q9H9Y2 349 aaKnown RBP13.82□□□□□ -0.2
SEC13-216ENST00000479868 PARVAQ9NVD7 372 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 CALCOCO1Q9P1Z2 691 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 NXF1Q9UBU9 619 aaKnown RBP13.82□□□□□ -0.2
SEC13-216ENST00000479868 SIX4Q9UIU6 781 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 AKT3Q9Y243 479 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 USTQ9Y2C2 406 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.82□□□□□ -0.2
SEC13-216ENST00000479868 IQCA1LA6NCM1 817 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 GOLGA6L10A6NI86 522 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 HMGB1P1B2RPK0 211 aaPredicted RBP13.82□□□□□ -0.2
SEC13-216ENST00000479868 SNAI1O95863 264 aaPredicted RBP13.82□□□□□ -0.2
SEC13-216ENST00000479868 KRT19P08727 400 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 MYZAPP0CAP1 466 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 RAP1GAPP47736 663 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 WDTC1Q8N5D0 677 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 C1orf127Q8N9H9 656 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.82□□□□□ -0.2
SEC13-216ENST00000479868 FEZF2Q8TBJ5 459 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 HEMGNQ9BXL5 484 aa13.82□□□□□ -0.2
SEC13-216ENST00000479868 RBM47A0AV96 593 aaKnown RBP13.81□□□□□ -0.2
SEC13-216ENST00000479868 LACTBL1A8MY62 500 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PSTPIP1O43586 416 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 ECEL1O95672 775 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 STAG3L1P0CL83 205 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 RALAP11233 206 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 NR1D1P20393 614 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 GJC1P36383 396 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 GNGT1P63211 74 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PPP1R2P3Q6NXS1 205 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 KDM7AQ6ZMT4 941 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 ANKS1BQ7Z6G8 1248 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 CCDC50Q8IVM0 306 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 RHOT1Q8IXI2 618 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 RUNDC3BQ96NL0 473 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PDZD7Q9H5P4 517 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 R3HDM2Q9Y2K5 976 aaKnown RBP13.81□□□□□ -0.2
SEC13-216ENST00000479868 IVNS1ABPQ9Y6Y0 642 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PASKQ96RG2 1323 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 TCRBV5S1A1TA0A578 114 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 ERLIN2O94905 339 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 IL18RAPO95256 599 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 LSM8O95777 96 aaKnown RBP13.81□□□□□ -0.2
SEC13-216ENST00000479868 TCF4P15884 667 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 GTF2A2P52657 109 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 POU5F1BQ06416 359 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 ZNF252P-AS1Q0IIN9 211 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PDCLQ13371 301 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 FAM187BQ17R55 369 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 WDR72Q3MJ13 1102 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 JADE1Q6IE81 842 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 PNMA8AQ86V59 439 aaPredicted RBP13.81□□□□□ -0.2
SEC13-216ENST00000479868 EMID1Q96A84 441 aaPredicted RBP13.81□□□□□ -0.2
SEC13-216ENST00000479868 SLC45A1Q9Y2W3 748 aa13.81□□□□□ -0.2
SEC13-216ENST00000479868 KAT6AQ92794 2004 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 TMEM191CA6NGB0 347 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 MAGEB2O15479 319 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 STRNO43815 780 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 CALB1P05937 261 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 ARF4P18085 180 aaPredicted RBP13.8□□□□□ -0.2
SEC13-216ENST00000479868 SSR1P43307 286 aaKnown RBP13.8□□□□□ -0.2
SEC13-216ENST00000479868 PMS2P54278 862 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 CDH8P55286 799 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 KRT17Q04695 432 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 KLF1Q13351 362 aaPredicted RBP13.8□□□□□ -0.2
SEC13-216ENST00000479868 PPP1R7Q15435 360 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 ATP13A4Q4VNC1 1196 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 UBAP2Q5T6F2 1119 aaKnown RBP13.8□□□□□ -0.2
SEC13-216ENST00000479868 MTHFD1LQ6UB35 978 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 GPR142Q7Z601 462 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 IFNLR1Q8IU57 520 aaPredicted RBP13.8□□□□□ -0.2
SEC13-216ENST00000479868 KATNAL2Q8IYT4 538 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 TMEM35BQ8NCS4 154 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 SLCO2A1Q92959 643 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 ART4Q93070 314 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 MCEEQ96PE7 176 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 MORF4L1Q9UBU8 362 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 PCDHGC3Q9UN70 934 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 H3BRB1 525 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 TP73O15350 636 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 EIF3HO15372 352 aaKnown RBP eCLIP13.8□□□□□ -0.2
SEC13-216ENST00000479868 SHBGP04278 402 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 OGDHQ02218 1023 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 ORC1Q13415 861 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 SPDYCQ5MJ68 293 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 CYP4A22Q5TCH4 519 aa13.8□□□□□ -0.2
SEC13-216ENST00000479868 EMC10Q5UCC4 262 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms