RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ALG13Q9NP73 1137 aaKnown RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 CHST12Q9NRB3 414 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 DACT1Q9NYF0 836 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 WRAP73Q9P2S5 460 aaPredicted RBP7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 PCDHA12Q9UN75 941 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 PCDHB12Q9Y5F1 795 aa7.58□□□□□ -1.2
CCDC88A-213ENST00000476903 NCANO14594 1321 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 A0A0U1RQF3 1178 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 CSPG5O95196 566 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 EOMESO95936 686 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 LAG3P18627 525 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 FGFR4P22455 802 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 RBM25P49756 843 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 NPEPPSP55786 919 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 GUCY1B3Q02153 619 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 CYP4A11Q02928 519 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 UBE3AQ05086 875 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 CTTNQ14247 550 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 SLC23A3Q6PIS1 610 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TPH2Q8IWU9 490 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 THNSL1Q8IYQ7 743 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 GJD3Q8N144 294 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 LRRC43Q8N309 656 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM184AQ8NB25 1140 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 COLGALT1Q8NBJ5 622 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 SPPL3Q8TCT6 385 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 POF1BQ8WVV4 589 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TCP11Q8WWU5 503 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 RSPH1Q8WYR4 309 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 NECAB3Q96P71 396 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 KIF2CQ99661 725 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 EIF2AK1Q9BQI3 630 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TMEM117Q9H0C3 514 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 FOXP1Q9H334 677 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 DHX33Q9H6R0 707 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TTC12Q9H892 705 aaPredicted RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 LIN7BQ9HAP6 207 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TYW1Q9NV66 732 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 CLDND1Q9NY35 253 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 RGL1Q9NZL6 768 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 FAM50BQ9Y247 325 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 COL4A3BPQ9Y5P4 624 aa7.57□□□□□ -1.2
CCDC88A-213ENST00000476903 TDRD15B5MCY1 1934 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 PRRG2O14669 202 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 ASAP2O43150 1006 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CSDE1O75534 798 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 FGF18O76093 207 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 SLITRK3O94933 977 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 LYPLA2O95372 231 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TSPAN15O95858 294 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 KRT1P04264 644 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 DNAJB1P25685 340 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 MCM7P33993 719 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 PPM1AP35813 382 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 HYAL1Q12794 435 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 ORC2Q13416 577 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 GNL2Q13823 731 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CAMK1Q14012 370 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 EMC2Q15006 297 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 RABEP1Q15276 862 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 XKR9Q5GH70 373 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TWF2Q6IBS0 349 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CATSPER4Q7RTX7 472 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 SRGAP1Q7Z6B7 1085 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 ZSWIM9Q86XI8 627 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 RNF169Q8NCN4 708 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 PRPF31Q8WWY3 499 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TMEM143Q96AN5 459 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 HRASLS5Q96KN8 279 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CCDC43Q96MW1 224 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CASD1Q96PB1 797 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 FANCD2OSQ96PS1 177 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 MTMR9Q96QG7 549 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 HSD17B14Q9BPX1 270 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TRAIPQ9BWF2 469 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 MRPL9Q9BYD2 267 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TNKS2Q9H2K2 1166 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 CWH43Q9H720 699 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 UPF2Q9HAU5 1272 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 IFT122Q9HBG6 1241 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 TLR9Q9NR96 1032 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 ANKEF1Q9NU02 776 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 RNF19AQ9NV58 838 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 PIN4Q9Y237 131 aaKnown RBP7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 PCDHGC5Q9Y5F6 944 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 C5orf42Q9H799 3197 aa7.56□□□□□ -1.2
CCDC88A-213ENST00000476903 FSD2A1L4K1 749 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 CARNS1A5YM72 827 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 H3BQ06 376 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 CEACAM5P06731 702 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 OR52Z1P0C646 297 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 SRGAP2CP0DJJ0 459 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 ATF7P17544 494 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 ATP2B1P20020 1258 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 RAP1GAPP47736 663 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 RAB27AP51159 221 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 LAMTOR4Q0VGL1 99 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 TFDP1Q14186 410 aa7.55□□□□□ -1.2
CCDC88A-213ENST00000476903 MXD4Q14582 209 aaPredicted RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms