RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SLC39A14Q15043 492 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 POSTNQ15063 836 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 FAM78AQ5JUQ0 283 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 CCDC73Q6ZRK6 1079 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 C1orf210Q8IVY1 113 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 ADSSL1Q8N142 457 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 DNAJC19Q96DA6 116 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 USP28Q96RU2 1077 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 BACH2Q9BYV9 841 aa17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 ZSCAN16Q9H4T2 348 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 MRPL44Q9H9J2 332 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-204ENST00000469003 NRG2O14511 850 aaPredicted RBP17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 LRRN2O75325 713 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 CYP11A1P05108 521 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 DUSP4Q13115 394 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 UBXN2BQ14CS0 331 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 CENPPQ6IPU0 288 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 ARMCX5Q6P1M9 558 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 CRELD2Q6UXH1 353 aaPredicted RBP17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 POMGNT1Q8WZA1 660 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 DNASE1L2Q92874 299 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 SMARCD2Q92925 531 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 ZSWIM3Q96MP5 696 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 IKZF4Q9H2S9 585 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 CRISPLD1Q9H336 500 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 LTB4R2Q9NPC1 389 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 EXOC7Q9UPT5 735 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 SCN1AP35498 2009 aa17.94■□□□□ 0.46
CCDC28B-204ENST00000469003 ZNF292O60281 2723 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 MTMR11A4FU01 709 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 FAM170BA6NMN3 283 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 IL18RAPO95256 599 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 ADSSP30520 456 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 MAGEA9P43362 315 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 ALDH1A3P47895 512 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 EPHB3P54753 998 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 L1TD1Q5T7N2 865 aaKnown RBP17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TPRG1Q6ZUI0 275 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 NT5DC4Q86YG4 428 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 ACCSQ96QU6 501 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TMEM209Q96SK2 561 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 NELL2Q99435 816 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TRMT61BQ9BVS5 477 aaKnown RBP17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 LRRC3Q9BY71 257 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 BCO2Q9BYV7 579 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 GPR88Q9GZN0 384 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 DNAJC25Q9H1X3 360 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 SEMA4AQ9H3S1 761 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TRPV4Q9HBA0 871 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 OLFML3Q9NRN5 406 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 DPP3Q9NY33 737 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TBC1D7Q9P0N9 293 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 HSFX1Q9UBD0 423 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 DSEQ9UL01 958 aa17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 MTF2Q9Y483 593 aaPredicted RBP17.93■□□□□ 0.46
CCDC28B-204ENST00000469003 TCHHQ07283 1943 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 FRMD3A2A2Y4 597 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 K7ELQ4 463 aaPredicted RBP17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 STX6O43752 255 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 GCNT3O95395 438 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 SP9P0CG40 484 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 GJA1P17302 382 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 CD72P21854 359 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 STAT6P42226 847 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 TAF6P49848 677 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 KCNA1Q09470 495 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 ALCAMQ13740 583 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 GRM2Q14416 872 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 TEAD2Q15562 447 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 TMC8Q8IU68 726 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 EFCAB13Q8IY85 973 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 ATAD1Q8NBU5 361 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 OR10T2Q8NGX3 314 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 SHKBP1Q8TBC3 707 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 BRD9Q9H8M2 597 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 HEBP1Q9NRV9 189 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 SLC27A5Q9Y2P5 690 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 ASB3Q9Y575 518 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 PCDHB13Q9Y5F0 798 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 PATJQ8NI35 1801 aa17.92■□□□□ 0.46
CCDC28B-204ENST00000469003 FANCMQ8IYD8 2048 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 CACNA1BQ00975 2339 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 A0A087X0B3 334 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 CYB561D2O14569 222 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 IDEP14735 1019 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 PSMC3P17980 439 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 NASPP49321 788 aaPredicted RBP17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 ZC3H14Q6PJT7 736 aaKnown RBP17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 VITQ6UXI7 678 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 ZNF852Q6ZMS4 543 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 METTL23Q86XA0 190 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 ZSCAN18Q8TBC5 510 aaPredicted RBP17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 DEPDC1BQ8WUY9 529 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 IRF7Q92985 503 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 PYM1Q9BRP8 204 aaKnown RBP17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 PANK2Q9BZ23 570 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 ZCWPW1Q9H0M4 648 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 TRPV5Q9NQA5 729 aa17.91■□□□□ 0.46
CCDC28B-204ENST00000469003 MRPS17Q9Y2R5 130 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms