RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ODC1P11926 461 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 GCLMP48507 274 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 CLDN10P78369 228 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 FKBP3Q00688 224 aaKnown RBP12.55□□□□□ -0.4
CUX1-207ENST00000465461 ROR1Q01973 937 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 CREMQ03060 361 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 PPP3CAQ08209 521 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 PAK1Q13153 545 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 RAB33AQ14088 237 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 OVOS1Q6IE37 1185 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 TTI2Q6NXR4 508 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 PDXDC1Q6P996 788 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 USP37Q86T82 979 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 GPR65Q8IYL9 337 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 PDCL2Q8N4E4 241 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 LRRC52Q8N7C0 313 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 TRIML1Q8N9V2 468 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 KREMEN2Q8NCW0 462 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 OR10T2Q8NGX3 314 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 TMC2Q8TDI7 906 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 ZNF560Q96MR9 790 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 PGLYRP2Q96PD5 576 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 MED15Q96RN5 788 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 RTP3Q9BQQ7 232 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 L1RE1Q9UN81 338 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 POLIQ9UNA4 740 aa12.55□□□□□ -0.4
CUX1-207ENST00000465461 R3HCC1Q9Y3T6 440 aaKnown RBP12.55□□□□□ -0.4
CUX1-207ENST00000465461 USP15Q9Y4E8 981 aaPredicted RBP12.55□□□□□ -0.4
CUX1-207ENST00000465461 TSC2P49815 1807 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 OAZ2O95190 189 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 SEC24AO95486 1093 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 SRGAP2BP0DMP2 458 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 EPB41P11171 864 aaKnown RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 KRT13P13646 458 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 TYMPP19971 482 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 ACAT1P24752 427 aaKnown RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 PNPLA4P41247 253 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 LRRC63Q05C16 580 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 TRPC3Q13507 836 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 AAK1Q2M2I8 961 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 SOWAHAQ2M3V2 549 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 DPCR1Q3MIW9 517 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 DCAF17Q5H9S7 520 aaPredicted RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 TJAP1Q5JTD0 557 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 SPOPLQ6IQ16 392 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 SLC8B1Q6J4K2 584 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 ZNF280DQ6N043 979 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 RNF19BQ6ZMZ0 732 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 INTS8Q75QN2 995 aaKnown RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 SV2AQ7L0J3 742 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 OSTM1Q86WC4 334 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 ZC3H3Q8IXZ2 948 aaKnown RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 SMRP1Q8NCR6 262 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 PI4K2AQ9BTU6 479 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 GTPBP4Q9BZE4 634 aaKnown RBP12.54□□□□□ -0.4
CUX1-207ENST00000465461 FBXW11Q9UKB1 542 aa12.54□□□□□ -0.4
CUX1-207ENST00000465461 CCDC195A0A1B0GUA6 201 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 FSD2A1L4K1 749 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 MAPK13O15264 365 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 HUS1O60921 280 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 VNN2O95498 520 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 CYP11A1P05108 521 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 CPB1P15086 417 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 SP100P23497 879 aaPredicted RBP12.53□□□□□ -0.4
CUX1-207ENST00000465461 PPP1R2P41236 205 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 NLRP12P59046 1061 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 ADCY1Q08828 1119 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 MYO1EQ12965 1108 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 SMAD4Q13485 552 aaKnown RBP12.53□□□□□ -0.4
CUX1-207ENST00000465461 NCOA4Q13772 614 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 CCDC142Q17RM4 750 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 TCERG1LQ5VWI1 586 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 LRRTM3Q86VH5 581 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 METTL23Q86XA0 190 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 CREBRFQ8IUR6 639 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 SLC7A14Q8TBB6 771 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 MMS19Q96T76 1030 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 MRPL45Q9BRJ2 306 aaKnown RBP12.53□□□□□ -0.4
CUX1-207ENST00000465461 SRRTQ9BXP5 876 aaKnown RBP12.53□□□□□ -0.4
CUX1-207ENST00000465461 XYLT2Q9H1B5 865 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 ADAM7Q9H2U9 754 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 GDAP2Q9NXN4 497 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 TMEM63CQ9P1W3 806 aa12.53□□□□□ -0.4
CUX1-207ENST00000465461 NXF1Q9UBU9 619 aaKnown RBP12.53□□□□□ -0.4
CUX1-207ENST00000465461 BICDL2A1A5D9 508 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 SLC16A3O15427 465 aaKnown RBP12.52□□□□□ -0.41
CUX1-207ENST00000465461 CCL16O15467 120 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 ABLIM3O94929 683 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 HLA-DRAP01903 254 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 C8AP07357 584 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 HOXB8P17481 243 aaPredicted RBP12.52□□□□□ -0.41
CUX1-207ENST00000465461 LMO2P25791 158 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 PIK3CAP42336 1068 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 RAP1GAPP47736 663 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 WDR72Q3MJ13 1102 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 ZACNQ401N2 412 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 CCDC40Q4G0X9 1142 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 SCARA5Q6ZMJ2 495 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 C15orf39Q6ZRI6 1047 aa12.52□□□□□ -0.41
CUX1-207ENST00000465461 FILIP1Q7Z7B0 1213 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms