RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 FRMD4BQ9Y2L6 1034 aa13.57□□□□□ -0.24
HDAC4-207ENST00000461113 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.57□□□□□ -0.24
HDAC4-207ENST00000461113 PKD1L2Q7Z442 2459 aa13.57□□□□□ -0.24
HDAC4-207ENST00000461113 CLUHO75153 1309 aa13.57□□□□□ -0.24
HDAC4-207ENST00000461113 SMIM28A0A1B0GU29 152 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CCDC195A0A1B0GUA6 201 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CLIC2O15247 247 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 TBC1D4O60343 1298 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 LILRB5O75023 590 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CNPP09543 421 aaKnown RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CXCL8P10145 99 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 KCNE1P15382 129 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 ADSSP30520 456 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 MYBPC2Q14324 1141 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 SLC10A6Q3KNW5 377 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 C12orf56Q8IXR9 622 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 BEST2Q8NFU1 509 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CMASQ8NFW8 434 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 NETO1Q8TDF5 533 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 ERCC4Q92889 916 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 SAAL1Q96ER3 474 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 KIF12Q96FN5 646 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 SHDQ96IW2 340 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 FNBP1Q96RU3 617 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CBWD1Q9BRT8 395 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 VN1R3Q9BXE9 311 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 RBAKQ9NYW8 714 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CNTN3Q9P232 1028 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 DACH1Q9UI36 760 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 CPSF3Q9UKF6 684 aaKnown RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 UBQLN1Q9UMX0 589 aaKnown RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 DERAQ9Y315 318 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 MTF2Q9Y483 593 aaPredicted RBP13.56□□□□□ -0.24
HDAC4-207ENST00000461113 MYH11P35749 1972 aa13.56□□□□□ -0.24
HDAC4-207ENST00000461113 DENND4AQ7Z401 1863 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-207ENST00000461113 KANSL1LA0AUZ9 987 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 BICDL2A1A5D9 508 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 GOLGA8IPA6NC78 632 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 GOLGA8JA6NMD2 632 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 LACTBL1A8MY62 500 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 TISP43B9A030 160 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 BIN1O00499 593 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 TADA2AO75478 443 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 GALTP07902 379 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 RPL9P32969 192 aaKnown RBP13.55□□□□□ -0.24
HDAC4-207ENST00000461113 TNFSF9P41273 254 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 SPEM2Q0P670 501 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 TMEM132DQ14C87 1099 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 ENOX2Q16206 610 aaKnown RBP13.55□□□□□ -0.24
HDAC4-207ENST00000461113 COBLL1Q53SF7 1204 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 XKR4Q5GH76 650 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 GLRA4Q5JXX5 417 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 ISM2Q6H9L7 571 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 NT5DC4Q86YG4 428 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 ZNF280BQ86YH2 543 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 COLGALT2Q8IYK4 626 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 COL26A1Q96A83 441 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 DHTKD1Q96HY7 919 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-207ENST00000461113 HAPLN2Q9GZV7 340 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 MAN1C1Q9NR34 630 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 MIOSQ9NXC5 875 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 PRG3Q9Y2Y8 225 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-207ENST00000461113 NUMBLQ9Y6R0 609 aa13.55□□□□□ -0.24
HDAC4-207ENST00000461113 TTC26A0AVF1 554 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 CASTOR2A6NHX0 329 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 ANHXE9PGG2 379 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 PTGESO14684 152 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 NRP1O14786 923 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 CETN3O15182 167 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 TGFB1I1O43294 461 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 TRAPPC3O43617 180 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 DDHD2O94830 711 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 FGFR1OPO95684 399 aaKnown RBP13.54□□□□□ -0.24
HDAC4-207ENST00000461113 NR3C1P04150 777 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 LAMP2P13473 410 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 HOXD13P35453 343 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 PRCPP42785 496 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 SLC11A1P49279 550 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 AFF1P51825 1210 aaKnown RBP13.54□□□□□ -0.24
HDAC4-207ENST00000461113 GPC5P78333 572 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 ELAVL2Q12926 359 aaKnown RBP13.54□□□□□ -0.24
HDAC4-207ENST00000461113 HTR4Q13639 388 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 MORC3Q14149 939 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 UBXN2BQ14CS0 331 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 SNRNP35Q16560 246 aaKnown RBP13.54□□□□□ -0.24
HDAC4-207ENST00000461113 CCDC183Q5T5S1 534 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 CEP135Q66GS9 1140 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 TSSK4Q6SA08 328 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 ALKAL1Q6UXT8 129 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 SLC9A9Q8IVB4 645 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 BRSK2Q8IWQ3 736 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 SMYD4Q8IYR2 804 aaPredicted RBP13.54□□□□□ -0.24
HDAC4-207ENST00000461113 RDH13Q8NBN7 331 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 NELL1Q92832 810 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 IKZF4Q9H2S9 585 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 KCTD10Q9H3F6 313 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 TRAF3IP3Q9Y228 551 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 SSX2IPQ9Y2D8 614 aa13.54□□□□□ -0.24
HDAC4-207ENST00000461113 C2CD2Q9Y426 696 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms