RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	RECQL4	O94761	1208 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	RARB	P10826	455 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	FCER1A	P12319	257 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	TRIM27	P14373	513 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PEX2	P28328	305 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	ZEB1	P37275	1124 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	ZNF135	P52742	658 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	CACNB3	P54284	484 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	FAM193A	P78312	1265 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	FAM189B	P81408	668 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	SLC25A3	Q00325	362 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PURA	Q00577	322 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	SEMA5A	Q13591	1074 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	NRN1L	Q496H8	165 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	MAP9	Q49MG5	647 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	CRB2	Q5IJ48	1285 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PDSS2	Q86YH6	399 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	CCDC146	Q8IYE0	955 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	GPATCH11	Q8N954	259 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PCSK9	Q8NBP7	692 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PDPR	Q8NCN5	879 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	NUP133	Q8WUM0	1156 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	LRTOMT	Q8WZ04	291 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	ANKS1A	Q92625	1134 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	SCAMP4	Q969E2	229 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	P2RX7	Q99572	595 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	VKORC1	Q9BQB6	163 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	ZSWIM1	Q9BR11	485 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	APOL5	Q9BWW9	433 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	REXO4	Q9GZR2	422 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	GPR35	Q9HC97	309 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	CNNM1	Q9NRU3	951 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	MRPS18A	Q9NVS2	196 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	RLIM	Q9NVW2	624 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	PIH1D1	Q9NWS0	290 aa	Known RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	TERF2IP	Q9NYB0	399 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	VSX1	Q9NZR4	365 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	HSFX1	Q9UBD0	423 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	USP25	Q9UHP3	1055 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	AGAP1	Q9UPQ3	857 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	ATP11B	Q9Y2G3	1177 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	HS3ST3A1	Q9Y663	406 aa		4.16	□□□□□ -1.74
VPS8-215	ENST00000460158	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
VPS8-215	ENST00000460158		A0A1B0GTW7	788 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	CCDC194	A0A1B0GVG4	234 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	DIRC3	C9JPN6	131 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	NCR1	O76036	304 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	ANXA1	P04083	346 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	MYL1	P05976	194 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	ELANE	P08246	267 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	C1S	P09871	688 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	FGFR4	P22455	802 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	SLC7A1	P30825	629 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	KCNJ5	P48544	419 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	HSD11B2	P80365	405 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	OCA2	Q04671	838 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	KRTAP1-1	Q07627	177 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	SAFB	Q15424	915 aa	Known RBP eCLIP	4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	RNF207	Q6ZRF8	634 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	LRRC55	Q6ZSA7	311 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	NSUN7	Q8NE18	718 aa	Known RBP	4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	PJA1	Q8NG27	643 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	RNPEP	Q9H4A4	650 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	TPCN1	Q9ULQ1	816 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	CDYL	Q9Y232	598 aa		4.15	□□□□□ -1.75
VPS8-215	ENST00000460158	MYO1F	O00160	1098 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	TBX3	O15119	743 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	PMM2	O15305	246 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	FRS3	O43559	492 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	CREB3	O43889	395 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	SH3BP5	O60239	455 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	PQBP1	O60828	265 aa	Known RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	DNAJB5	O75953	348 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	KIF20A	O95235	890 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	GNAI2	P04899	355 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	SPATA31D3	P0C874	917 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	MYF5	P13349	255 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	NR4A1	P22736	598 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	ZFP36	P26651	326 aa	Known RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	ARFIP2	P53365	341 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	DGCR2	P98153	550 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	KLF10	Q13118	480 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	HABP2	Q14520	560 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	POLD3	Q15054	466 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	SPATA31D4	Q6ZUB0	917 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	USP37	Q86T82	979 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	MAPKAPK5	Q8IW41	473 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	CFAP52	Q8N1V2	620 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	APIP	Q96GX9	242 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	LRIG1	Q96JA1	1093 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	PLEKHG4B	Q96PX9	1271 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	PNKP	Q96T60	521 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	SLC46A2	Q9BY10	475 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	TRIM54	Q9BYV2	358 aa		4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS8-215	ENST00000460158	AKIP1	Q9NQ31	210 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms