RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CSTF2P33240 577 aaKnown RBP eCLIP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 IL13P35225 146 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 KCNJ6P48051 423 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 MTHFSP49914 203 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGDIBP52566 201 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CABP4P57796 275 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 PURAQ00577 322 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CETN1Q12798 172 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 STIM1Q13586 685 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 RAB3GAP1Q15042 981 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGAP29Q52LW3 1261 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 HECTD3Q5T447 861 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 WLSQ5T9L3 541 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SCARA3Q6AZY7 606 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 NEPROQ6NW34 567 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 TLDC1Q6P9B6 456 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 KCNT2Q6UVM3 1135 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CLEC17AQ6ZS10 378 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC121Q6ZUS5 278 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 PPP1R42Q7Z4L9 355 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 UBE3DQ7Z6J8 389 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 TADA2BQ86TJ2 420 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CAND1Q86VP6 1230 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SPATA24Q86W54 205 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SLFN12Q8IYM2 578 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC170Q8IYT3 715 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 TMEM145Q8NBT3 493 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 OR2W6PQ8NHA6 318 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 EXOC6Q8TAG9 804 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 BCL7CQ8WUZ0 217 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM167AQ96KS9 214 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CGREF1Q99674 301 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 GPATCH1Q9BRR8 931 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC106Q9BWC9 280 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 APOL5Q9BWW9 433 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 MKRN2Q9H000 416 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 ELAC1Q9H777 363 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 NMRK2Q9NPI5 230 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SPTLC3Q9NUV7 552 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 NFKBIL1Q9UBC1 381 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 SH3BGRL2Q9UJC5 107 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 CFL2Q9Y281 166 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 PCDHA8Q9Y5H6 950 aa5.15□□□□□ -1.59
CCDC88A-209ENST00000456975 COL3A1P02461 1466 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 GPR75-ASB3A0A0A6YYF3 556 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ARHGAP10A1A4S6 786 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 FAM155AB1AL88 458 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 PI4K2BG5E9Z4 385 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 H3BRJ5 948 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 FZD9O00144 591 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 C2CD2LO14523 706 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 RGS13O14921 159 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MAN1A2O60476 641 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CLEC3AO75596 197 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 DGKIO75912 1065 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 GLRX3O76003 335 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 FKBP9O95302 570 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 NPTXRO95502 500 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CD4P01730 458 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CYP11A1P05108 521 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ZKSCAN1P17029 563 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 PPP2R1AP30153 589 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 RPL9P32969 192 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 IDUAP35475 653 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 GRIK1P39086 918 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ADH7P40394 386 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF143P52747 638 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MYL6P60660 151 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ERVK-21P61565 698 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 BYSLQ13895 437 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 PPP2R5DQ14738 602 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.14□□□□□ -1.596e-6■□□□□ 8.6
CCDC88A-209ENST00000456975 USH1GQ495M9 461 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 TMTC4Q5T4D3 741 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CCDC183Q5T5S1 534 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CNSTQ6PJW8 725 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MFSD6Q6ZSS7 791 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 FKBP9P1Q75LS8 142 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ZNF619Q8N2I2 560 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CPA6Q8N4T0 437 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MAB21L3Q8N8X9 362 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 SMC1BQ8NDV3 1235 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CDC26Q8NHZ8 85 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 DEPTORQ8TB45 409 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 CACTINQ8WUQ7 758 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 PTPRN2Q92932 1015 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 DHX58Q96C10 678 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 SYTL4Q96C24 671 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 LTV1Q96GA3 475 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 HIC2Q96JB3 615 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MRGPRX3Q96LB0 322 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 TCEANC2Q96MN5 208 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 EIF2AQ9BY44 585 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 WNT10AQ9GZT5 417 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 C8orf33Q9H7E9 229 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 KIAA1586Q9HCI6 787 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 RASSF1Q9NS23 344 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 ATAD3AQ9NVI7 634 aa5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 PPARGC1AQ9UBK2 798 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-209ENST00000456975 MALT1Q9UDY8 824 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms