RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 ZKSCAN5Q9Y2L8 839 aa20.61■□□□□ 0.89
RPS28-202ENST00000449223 TSC2P49815 1807 aa20.61■□□□□ 0.89
RPS28-202ENST00000449223 CCDC85CA6NKD9 419 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 CLSTN1O94985 981 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 WEE2P0C1S8 567 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 DEFB103AP81534 67 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 PTK2Q05397 1052 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 RNASELQ05823 741 aaKnown RBP20.6■□□□□ 0.89
RPS28-202ENST00000449223 SOWAHAQ2M3V2 549 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 TMEM270Q6UE05 265 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 RAD9BQ6WBX8 426 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 SCARA5Q6ZMJ2 495 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 OLIG1Q8TAK6 271 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 SPATA18Q8TC71 538 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 TMEM175Q9BSA9 504 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 NRDE2Q9H7Z3 1164 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 NOCTQ9UK39 431 aaKnown RBP20.6■□□□□ 0.89
RPS28-202ENST00000449223 BARX2Q9UMQ3 279 aaPredicted RBP20.6■□□□□ 0.89
RPS28-202ENST00000449223 PCDHB4Q9Y5E5 795 aa20.6■□□□□ 0.89
RPS28-202ENST00000449223 CYP26A1O43174 497 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 LCA5LO95447 670 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 PLEKP08567 350 aaPredicted RBP20.59■□□□□ 0.89
RPS28-202ENST00000449223 GATMP50440 423 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 EPHB4P54760 987 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 ARID5AQ03989 594 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 TDRD12Q587J7 1177 aaKnown RBP20.59■□□□□ 0.89
RPS28-202ENST00000449223 OTOP2Q7RTS6 562 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 ZNF677Q86XU0 584 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 RBBP8NLQ8NC74 664 aaPredicted RBP20.59■□□□□ 0.89
RPS28-202ENST00000449223 WHAMMQ8TF30 809 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 HERVK_113Q902F9 699 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 FAM193BQ96PV7 902 aaPredicted RBP20.59■□□□□ 0.89
RPS28-202ENST00000449223 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.59■□□□□ 0.89
RPS28-202ENST00000449223 CACNG4Q9UBN1 327 aa20.59■□□□□ 0.89
RPS28-202ENST00000449223 TBKBP1A7MCY6 615 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 M0QZQ0 153 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 B3GAT3O94766 335 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 PAEPP09466 180 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 KRT5P13647 590 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 CYP11B1P15538 503 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 CYLC1P35663 651 aaPredicted RBP20.58■□□□□ 0.89
RPS28-202ENST00000449223 EIF4A3P38919 411 aaKnown RBP20.58■□□□□ 0.89
RPS28-202ENST00000449223 CDH8P55286 799 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 BMS1Q14692 1282 aaKnown RBP20.58■□□□□ 0.89
RPS28-202ENST00000449223 ZNF571Q7Z3V5 609 aaPredicted RBP20.58■□□□□ 0.89
RPS28-202ENST00000449223 SLC47A2Q86VL8 602 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 UNC93AQ86WB7 457 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 APPL2Q8NEU8 664 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 KBTBD7Q8WVZ9 684 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 DDX1Q92499 740 aaKnown RBP20.58■□□□□ 0.89
RPS28-202ENST00000449223 CCDC42Q96M95 316 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 MMS19Q96T76 1030 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.58■□□□□ 0.893e-13■■■□□ 14.8
RPS28-202ENST00000449223 DNAJB4Q9UDY4 337 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 L1RE1Q9UN81 338 aa20.58■□□□□ 0.89
RPS28-202ENST00000449223 CARNS1A5YM72 827 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 HUS1O60921 280 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 UPP2O95045 317 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 KIF4AO95239 1232 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 NDUFA10O95299 355 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 CYP11A1P05108 521 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 SYN1P17600 705 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 CD58P19256 250 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 IGFBP6P24592 240 aaPredicted RBP20.58■□□□□ 0.88
RPS28-202ENST00000449223 USP8P40818 1118 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 RAP1GAPP47736 663 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 PDE6CP51160 858 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 CMTR2Q8IYT2 770 aaKnown RBP20.58■□□□□ 0.88
RPS28-202ENST00000449223 TMEM86AQ8N2M4 240 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 SUSD3Q96L08 255 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 SENP8Q96LD8 212 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 KCND1Q9NSA2 647 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 PYCARDQ9ULZ3 195 aa20.58■□□□□ 0.88
RPS28-202ENST00000449223 EPN1Q9Y6I3 576 aaPredicted RBP20.58■□□□□ 0.88
RPS28-202ENST00000449223 EIF3CLB5ME19 914 aaKnown RBP20.57■□□□□ 0.88
RPS28-202ENST00000449223 CYB561D2O14569 222 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 GABRDO14764 452 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 WARSP23381 471 aaKnown RBP20.57■□□□□ 0.88
RPS28-202ENST00000449223 KIF11P52732 1056 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 RAD23BP54727 409 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 MTF1Q14872 753 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 SLC18A3Q16572 532 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 TIGD5Q53EQ6 642 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 RASIP1Q5U651 963 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 NOP9Q86U38 636 aaKnown RBP20.57■□□□□ 0.88
RPS28-202ENST00000449223 VPS36Q86VN1 386 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 PDCL2Q8N4E4 241 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 SLC30A5Q8TAD4 765 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 DPF3Q92784 378 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 EIF3CQ99613 913 aaKnown RBP20.57■□□□□ 0.88
RPS28-202ENST00000449223 PCDH10Q9P2E7 1040 aa20.57■□□□□ 0.88
RPS28-202ENST00000449223 ZMYND8Q9ULU4 1186 aaPredicted RBP20.57■□□□□ 0.88
RPS28-202ENST00000449223 ARHGEF37A1IGU5 675 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 GJB5O95377 273 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 HTRA4P83105 476 aaPredicted RBP20.56■□□□□ 0.88
RPS28-202ENST00000449223 CDR2Q01850 454 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 SLC4A11Q8NBS3 891 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 PHOSPHO2Q8TCD6 241 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 KIAA1524Q8TCG1 905 aa20.56■□□□□ 0.88
RPS28-202ENST00000449223 SLC9A7Q96T83 725 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms