RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 APOA5Q6Q788 366 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 Q6ZPA2 131 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 MAEAQ7L5Y9 396 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 SRGAP1Q7Z6B7 1085 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 FAM43AQ8N2R8 423 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 MPHOSPH6Q99547 160 aaKnown RBP4.41□□□□□ -1.7
VPS41-207ENST00000439468 C22orf23Q9BZE7 217 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 SERHL2Q9H4I8 314 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 FAM204AQ9H8W3 233 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 SLAMF7Q9NQ25 335 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 RNF181Q9P0P0 153 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 FNIP2Q9P278 1114 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 SLC45A2Q9UMX9 530 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 HS3ST4Q9Y661 456 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 FPGT-TNNI3KV9GXZ4 949 aa4.41□□□□□ -1.7
VPS41-207ENST00000439468 PRSS29PA6NIE9 313 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 KIAA0391O15091 583 aaKnown RBP4.4□□□□□ -1.71
VPS41-207ENST00000439468 GRM6O15303 877 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 SLC16A6O15403 523 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TEX33O43247 280 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 PLIN1O60240 522 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 RHOBTB3O94955 611 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 POMCP01189 267 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 CD1AP06126 327 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 BMP5P22003 454 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 SMARCA1P28370 1054 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 PRDX5P30044 214 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 RESTQ13127 1097 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 FGL2Q14314 439 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 SPDYE7PQ495Y7 208 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 FAM102AQ5T9C2 384 aaPredicted RBP4.4□□□□□ -1.71
VPS41-207ENST00000439468 THEMIS2Q5TEJ8 643 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 DARS2Q6PI48 645 aaKnown RBP4.4□□□□□ -1.71
VPS41-207ENST00000439468 DNAJC10Q8IXB1 793 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 BEND2Q8NDZ0 799 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 OR56A1Q8NGH5 318 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 SVIPQ8NHG7 77 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 CASKIN2Q8WXE0 1202 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TNPO1Q92973 898 aaKnown RBP4.4□□□□□ -1.71
VPS41-207ENST00000439468 CAVIN3Q969G5 261 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TTC17Q96AE7 1141 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 RNF31Q96EP0 1072 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TBCBQ99426 244 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 ZSWIM1Q9BR11 485 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 FBXO34Q9NWN3 711 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 CALCOCO1Q9P1Z2 691 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TESQ9UGI8 421 aaKnown RBP4.4□□□□□ -1.71
VPS41-207ENST00000439468 NOX1Q9Y5S8 564 aa4.4□□□□□ -1.71
VPS41-207ENST00000439468 TMEM200CA6NKL6 621 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 PRSS23O95084 383 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 HRGP04196 525 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 ITGAMP11215 1152 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 SLC6A2P23975 617 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 PEX2P28328 305 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 SERPINB3P29508 390 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 ZEB1P37275 1124 aaPredicted RBP4.39□□□□□ -1.71
VPS41-207ENST00000439468 AVPR1BP47901 424 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 CREMQ03060 361 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 EXOSC9Q06265 439 aaKnown RBP4.39□□□□□ -1.71
VPS41-207ENST00000439468 TP53BP2Q13625 1128 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 KHDC1LQ5JSQ8 128 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 AGAP9Q5VTM2 703 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 FAM90A1Q86YD7 464 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 MAPKAPK5Q8IW41 473 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 ARHGEF19Q8IW93 802 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 RHOT2Q8IXI1 618 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 IL31RAQ8NI17 732 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 LRTOMTQ8WZ04 291 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 CRAMP1Q96RY5 1269 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 RPS6KC1Q96S38 1066 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 NEU1Q99519 415 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 P2RX7Q99572 595 aaKnown RBP4.39□□□□□ -1.71
VPS41-207ENST00000439468 C11orf54Q9H0W9 315 aaPredicted RBP4.39□□□□□ -1.71
VPS41-207ENST00000439468 MRPL46Q9H2W6 279 aaKnown RBP4.39□□□□□ -1.71
VPS41-207ENST00000439468 GSTO2Q9H4Y5 243 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 PACSIN3Q9UKS6 424 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 PHTF1Q9UMS5 762 aa4.39□□□□□ -1.71
VPS41-207ENST00000439468 GRID2IPA4D2P6 1211 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 CDKL5O76039 1030 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 NUDT3O95989 172 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 NPR1P16066 1061 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 BMPR1AP36894 532 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 PIK3CBP42338 1070 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 NANOS3P60323 173 aaKnown RBP4.38□□□□□ -1.71
VPS41-207ENST00000439468 FAM193AP78312 1265 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 BIRC2Q13490 618 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 PICALMQ13492 652 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 ATP2B3Q16720 1220 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 KRTAP15-1Q3LI76 137 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 OTUD7BQ6GQQ9 843 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 FOXR2Q6PJQ5 311 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 SEM1Q6ZVN7 128 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 PCSK9Q8NBP7 692 aaKnown RBP4.38□□□□□ -1.71
VPS41-207ENST00000439468 GPR150Q8NGU9 434 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 MRGPRX1Q96LB2 322 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 ALOXE3Q9BYJ1 711 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 RNPEPQ9H4A4 650 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.38□□□□□ -1.71
VPS41-207ENST00000439468 CPNE7Q9UBL6 633 aa4.38□□□□□ -1.71
VPS41-207ENST00000439468 ZNHIT2Q9UHR6 403 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms