RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GRASPQ7Z6J2 395 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 CSGALNACT2Q8N6G5 542 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 ZNF507Q8TCN5 953 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 NOC3LQ8WTT2 800 aaKnown RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 PIK3R5Q8WYR1 880 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 PRIMPOLQ96LW4 560 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 PDZD7Q9H5P4 517 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 GRPEL1Q9HAV7 217 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 ARHGEF3Q9NR81 526 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 PRMT7Q9NVM4 692 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-208ENST00000437607 SNTG2Q9NY99 539 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 TBX20Q9UMR3 447 aa13.17□□□□□ -0.3
PTPRF-208ENST00000437607 SF3B1O75533 1304 aaKnown RBP eCLIP13.16□□□□□ -0.38e-8■■■■■ 126.3
PTPRF-208ENST00000437607 PDXKO00764 312 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 LRRN2O75325 713 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 PRKCBP05771 671 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 FSHRP23945 695 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 PMS1P54277 932 aaKnown RBP13.16□□□□□ -0.3
PTPRF-208ENST00000437607 CREMQ03060 361 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 PSMD5Q16401 504 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 MAPK6Q16659 721 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 TMEM132AQ24JP5 1023 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 EDRF1Q3B7T1 1238 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 FAM171A1Q5VUB5 890 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 DCLRE1AQ6PJP8 1040 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 FAM114A1Q8IWE2 563 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 ANKRD20A12PQ8NF67 263 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 NTPCRQ9BSD7 190 aaKnown RBP13.16□□□□□ -0.3
PTPRF-208ENST00000437607 TTPALQ9BTX7 342 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 STRA6Q9BX79 667 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 FOXQ1Q9C009 403 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 CCDC113Q9H0I3 377 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 KCTD10Q9H3F6 313 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 TMEM134Q9H6X4 195 aa13.16□□□□□ -0.3
PTPRF-208ENST00000437607 CGNQ9P2M7 1197 aaKnown RBP13.16□□□□□ -0.3
PTPRF-208ENST00000437607 MAGEC2Q9UBF1 373 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-208ENST00000437607 GPR179Q6PRD1 2367 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 K7ERI5 159 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 RECQL4O94761 1208 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 LMNAP02545 664 aaKnown RBP13.15□□□□□ -0.3
PTPRF-208ENST00000437607 SP9P0CG40 484 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 RFX1P22670 979 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 NR2F2P24468 414 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 LIG4P49917 911 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 STARD6P59095 220 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 GPC5P78333 572 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 PLCB2Q00722 1185 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 SPAG1Q07617 926 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 NCAPHQ15003 741 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 UVSSAQ2YD98 709 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ZCWPW2Q504Y3 356 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 EEF1DP3Q658K8 133 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ANKRD40Q6AI12 368 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ARMCX5Q6P1M9 558 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 CD300LGQ6UXG3 332 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ERMP1Q7Z2K6 904 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 MAML2Q8IZL2 1156 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-208ENST00000437607 PJA1Q8NG27 643 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ITFG1Q8TB96 612 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 KCNN1Q92952 543 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 MRPL4Q9BYD3 311 aaKnown RBP13.15□□□□□ -0.3
PTPRF-208ENST00000437607 CDH7Q9ULB5 785 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 TRAF3IP3Q9Y228 551 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 SIT1Q9Y3P8 196 aa13.15□□□□□ -0.3
PTPRF-208ENST00000437607 ZFP37Q9Y6Q3 630 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-208ENST00000437607 DENND4CQ5VZ89 1909 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 N4BP3O15049 544 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 CCL16O15467 120 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 NR3C1P04150 777 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 THP07101 528 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 C8AP07357 584 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 HNRNPA1P09651 372 aaKnown RBP eCLIP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 RPL13P26373 211 aaKnown RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 HOXA9P31269 272 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 SNRPFP62306 86 aaKnown RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 FKBP3Q00688 224 aaKnown RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 KCNA1Q09470 495 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 PPM1LQ5SGD2 360 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 POTEHQ6S545 545 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 RSPO2Q6UXX9 243 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 TAS1R3Q7RTX0 852 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 CEP57Q86XR8 500 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 C1orf210Q8IVY1 113 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 ANP32BQ92688 251 aaKnown RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 FGF13Q92913 245 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 CEP63Q96MT8 703 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 DDX23Q9BUQ8 820 aaKnown RBP13.14□□□□□ -0.31
PTPRF-208ENST00000437607 SEMA4AQ9H3S1 761 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 THAP9Q9H5L6 903 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 AGPAT3Q9NRZ7 376 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 HCFC1R1Q9NWW0 138 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 F5P12259 2224 aa13.14□□□□□ -0.31
PTPRF-208ENST00000437607 ACKR2O00590 384 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 CETN3O15182 167 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 PIGRP01833 764 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 TPM2P07951 284 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 EPB41P11171 864 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 CDK11BP21127 795 aaKnown RBP13.13□□□□□ -0.31
PTPRF-208ENST00000437607 FGFR3P22607 806 aa13.13□□□□□ -0.31
PTPRF-208ENST00000437607 HOXD13P35453 343 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms