RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 RCN1Q15293 331 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 LONP2Q86WA8 852 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 OMA1Q96E52 524 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 DNAJC7Q99615 494 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 NOL6Q9H6R4 1146 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 TTLL3Q9Y4R7 772 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PARP3Q9Y6F1 533 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 TECP42680 631 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CDK16Q00536 496 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GPS1Q13098 491 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 C11orf63Q6NUN7 778 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SCYL2Q6P3W7 929 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 BORCS5Q969J3 196 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 AXIN1O15169 862 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GAS2O43903 313 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 TMEM253P0C7T8 217 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GSPT1P15170 499 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 GTF2H1P32780 548 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ACADSBP45954 432 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 IZUMO3Q5VZ72 239 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CD302Q8IX05 232 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CCNYQ8ND76 341 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ACOT12Q8WYK0 555 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MTMR12Q9C0I1 747 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ANKHQ9HCJ1 492 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GPTP24298 496 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PARP6Q2NL67 630 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CAMK1DQ8IU85 385 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 DCAF4Q8WV16 495 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 BSNDQ8WZ55 320 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SENP7Q9BQF6 1050 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ARMC7Q9H6L4 198 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SLC52A2Q9HAB3 445 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 SLC39A2Q9NP94 309 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 METTL21EPA6NDL7 271 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 DNAJA2O60884 412 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PDGFRBP09619 1106 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PSMC6P62333 389 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ATP2C1P98194 919 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 PAPD7Q5XG87 772 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 SRPK1Q96SB4 655 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 SMURF2Q9HAU4 748 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GTSE1Q9NYZ3 720 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 GLRA3O75311 464 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 NR3C1P04150 777 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 P4HBP07237 508 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 PSAPP07602 524 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CYP2C9P11712 490 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MSH3P20585 1137 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 KCNK10P57789 538 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 LBRQ14739 615 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 ARHGEF19Q8IW93 802 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PPIL6Q8IXY8 311 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 UBE2OQ9C0C9 1292 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 KIAA1257Q9ULG3 409 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MYO3BQ8WXR4 1341 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 F8VZ95 297 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 C21orf59P57076 290 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 HDLBPQ00341 1268 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 IL1RL1Q01638 556 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 HABP4Q5JVS0 413 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 TTC23Q5W5X9 447 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 USP38Q8NB14 1042 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CNDP1Q96KN2 507 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ING3Q9NXR8 418 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 TUBE1Q9UJT0 475 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 PLAGL2Q9UPG8 496 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ICE1Q9Y2F5 2266 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MEI4A8MW99 385 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 DNAJC6O75061 913 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 EPHB1P54762 984 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MAPK7Q13164 816 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 MSLNQ13421 630 aaPredicted RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 PPHLN1Q8NEY8 458 aaKnown RBP7.5□□□□□ -1.21
VPS53-204ENST00000437048 ACAD9Q9H845 621 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 L1RE1Q9UN81 338 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 CORO2BQ9UQ03 480 aa7.5□□□□□ -1.21
VPS53-204ENST00000437048 ARAP3Q8WWN8 1544 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SNPHO15079 494 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PLA2G4BP0C869 781 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 SRGNP10124 158 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PLCG1P19174 1290 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 FASP25445 335 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RRM2P31350 389 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 KNOP1Q1ED39 458 aaKnown RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 CACHD1Q5VU97 1274 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 E4F1Q66K89 784 aaPredicted RBP7.49□□□□□ -1.21
VPS53-204ENST00000437048 NELFCDQ8IXH7 590 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 GLG1Q92896 1179 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 C7orf25Q9BPX7 421 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 RAPGEFL1Q9UHV5 662 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 IPPQ9Y573 584 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 PJA2O43164 708 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 TMEM63BQ5T3F8 832 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 ARHGEF16Q5VV41 709 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 GALNT18Q6P9A2 607 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 APPL2Q8NEU8 664 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 MOSPD2Q8NHP6 518 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 POLG2Q9UHN1 485 aa7.49□□□□□ -1.21
VPS53-204ENST00000437048 LZTS1Q9Y250 596 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms