RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 IL10P22301 178 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 GUCY2CP25092 1073 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 RFC5P40937 340 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 CUL4AQ13619 759 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 DEPDC1Q5TB30 811 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 TDRD10Q5VZ19 366 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 PNPLA7Q6ZV29 1317 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 SLC35G2Q8TBE7 412 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 CRAMP1Q96RY5 1269 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 SLC1A1P43005 524 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 PPP2R2AP63151 447 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 MKRN4PQ13434 485 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 TKFCQ3LXA3 575 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 PAN2Q504Q3 1202 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 GRAMD4Q6IC98 578 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 STYK1Q6J9G0 422 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 PRMT1Q99873 361 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 NDUFB10O96000 172 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 AGPAT1Q99943 283 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM129AQ9BZQ8 928 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 POLE2P56282 527 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 ARID5BQ14865 1188 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 MDH1BQ5I0G3 518 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 PVALEFA0A1B0GWK0 134 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 CFAP99D6REC4 459 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 ZRANB3Q5FWF4 1079 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 RFX8Q6ZV50 586 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 LOXHD1Q8IVV2 1947 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 NWD1Q149M9 1564 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 SCFD2Q8WU76 684 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM161BQ96MY7 647 aa12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 MRPL1Q9BYD6 325 aaKnown RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 C20orf96Q9NUD7 363 aaPredicted RBP12.62□□□□□ -0.39
CCDC88A-207ENST00000436346 KIAA0391O15091 583 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 CCDC15Q0P6D6 951 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 FAM162AQ96A26 154 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 TMA16Q96EY4 203 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 NAV1Q8NEY1 1877 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 MAPRE2Q15555 327 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 C16orf86Q6ZW13 317 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 JADE3Q92613 823 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 ARFGEF2Q9Y6D5 1785 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 TCP11X1B4DZS4 312 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 ACTR2P61160 394 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 OCA2Q04671 838 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 GRIN1Q05586 938 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 MS4A14Q96JA4 679 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 STK33Q9BYT3 514 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 CDYLQ9Y232 598 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 KRT4P19013 534 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 C12orf60Q5U649 245 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 FBXO38Q6PIJ6 1188 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 DPF3Q92784 378 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 HES6Q96HZ4 224 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 NPHS2Q9NP85 383 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 SPATA31A6Q5VVP1 1343 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 ATP8B1O43520 1251 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 EXTL3O43909 919 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 KDM1AO60341 852 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 DHX34Q14147 1143 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 XKR3Q5GH77 459 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 CDC42EP5Q6NZY7 148 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 PCMTD2Q9NV79 361 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 MAFGO15525 162 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 CLASP2O75122 1294 aaKnown RBP12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 ARHGEF26Q96DR7 871 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 BRD8Q9H0E9 1235 aa12.61□□□□□ -0.39
CCDC88A-207ENST00000436346 PNMA6AP0CW24 399 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 BYSLQ13895 437 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TTLL13PA6NNM8 815 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 RGS2P41220 211 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 LAMC2Q13753 1193 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 PDK1Q15118 436 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 HORMAD1Q86X24 394 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 MYCBPQ99417 103 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 MAP3K13O43283 966 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TBC1D4O60343 1298 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 SLC9A1P19634 815 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 HDAC4P56524 1084 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 MED21Q13503 144 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 INPP5AQ14642 412 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 PLEKHM3Q6ZWE6 761 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TMEM117Q9H0C3 514 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 MARCOQ9UEW3 520 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 NUP205Q92621 2012 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 RNASEH1O60930 286 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 CKBP12277 381 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 UBE3AQ05086 875 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 POLD3Q15054 466 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 CENPPQ6IPU0 288 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 PRR5LQ6MZQ0 368 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TNIP2Q8NFZ5 429 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 PDHBP11177 359 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 KHDRBS2Q5VWX1 349 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 HIBCHQ6NVY1 386 aaPredicted RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 GUF1Q8N442 669 aaKnown RBP12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 TRABDQ9H4I3 376 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 HEATR9A2RTY3 570 aa12.6□□□□□ -0.39
CCDC88A-207ENST00000436346 SCP2P22307 547 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms