RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 YWHAHQ04917 246 aaPredicted RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 KCNMA1Q12791 1236 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 NAB2Q15742 525 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 USP41Q3LFD5 358 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 SFMBT2Q5VUG0 894 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CEP57Q86XR8 500 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 ADGRF2Q8IZF7 708 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 SPC24Q8NBT2 197 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 HASPINQ8TF76 798 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 TNIP3Q96KP6 325 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 SUSD3Q96L08 255 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 C11orf84Q9BUA3 381 aaPredicted RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 CXCL16Q9H2A7 254 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 PDCL3Q9H2J4 239 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 SLC28A3Q9HAS3 691 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CAPN11Q9UMQ6 739 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 PCDHB8Q9UN66 801 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 A0A1W2PPC1 479 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 URODP06132 367 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 FERP16591 822 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CD58P19256 250 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 TYMPP19971 482 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 TSPY1Q01534 308 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 PTK2Q05397 1052 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 FAM171A1Q5VUB5 890 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 SPOPLQ6IQ16 392 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 FUT10Q6P4F1 479 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CHRDL2Q6WN34 429 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 UNC93AQ86WB7 457 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 TATDN2Q93075 761 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 IGSF21Q96ID5 467 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 TGS1Q96RS0 853 aaKnown RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 NT5C1AQ9BXI3 368 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 XYLT2Q9H1B5 865 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 CWH43Q9H720 699 aa10.8□□□□□ -0.68
CD44-207ENST00000425428 BZW2Q9Y6E2 419 aaKnown RBP10.8□□□□□ -0.68
CD44-207ENST00000425428 GBF1Q92538 1859 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 ATP8B3O60423 1300 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 A8MXQ7 604 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 NT5C1B-RDH14C9J2C7 533 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 MED7O43513 233 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 TACC1O75410 805 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 KRT9P35527 623 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 RABGGTBP53611 331 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 SLC8A3P57103 927 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 DRAP1Q14919 205 aaPredicted RBP10.79□□□□□ -0.68
CD44-207ENST00000425428 MAPRE1Q15691 268 aaKnown RBP10.79□□□□□ -0.68
CD44-207ENST00000425428 ASIC2Q16515 512 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 PPP2R2DQ66LE6 453 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 OVOS1Q6IE37 1185 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 ZNF280DQ6N043 979 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 PHLDB3Q6NSJ2 640 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 TMEM270Q6UE05 265 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 ANKS3Q6ZW76 656 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 OR8K1Q8NGG5 319 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 LMO3Q8TAP4 145 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 SP7Q8TDD2 431 aaPredicted RBP10.79□□□□□ -0.68
CD44-207ENST00000425428 RABGGTAQ92696 567 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 CLP1Q92989 425 aaKnown RBP10.79□□□□□ -0.68
CD44-207ENST00000425428 TTPALQ9BTX7 342 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 DEF6Q9H4E7 631 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 CISHQ9NSE2 258 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 KIAA1257Q9ULG3 409 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 BARX2Q9UMQ3 279 aaPredicted RBP10.79□□□□□ -0.68
CD44-207ENST00000425428 CEP83Q9Y592 693 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 MYH10P35580 1976 aa10.79□□□□□ -0.68
CD44-207ENST00000425428 M0QZQ0 153 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 LRRN2O75325 713 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 IPO7O95373 1038 aaKnown RBP10.78□□□□□ -0.68
CD44-207ENST00000425428 WEE2P0C1S8 567 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 CASP14P31944 242 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 SOX5P35711 763 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 BMPR1AP36894 532 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 PBX1P40424 430 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 KLK7P49862 253 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 PDE6CP51160 858 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 UBE3AQ05086 875 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 TIGD5Q53EQ6 642 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 IQCEQ6IPM2 695 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 DDX53Q86TM3 631 aaKnown RBP10.78□□□□□ -0.68
CD44-207ENST00000425428 ARHGEF19Q8IW93 802 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 DCP1BQ8IZD4 617 aaKnown RBP10.78□□□□□ -0.68
CD44-207ENST00000425428 SLC39A11Q8N1S5 342 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 FAM84AQ96KN4 292 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 PAAF1Q9BRP4 392 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 BCO2Q9BYV7 579 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 GANQ9H2C0 597 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 RC3H2Q9HBD1 1191 aaKnown RBP10.78□□□□□ -0.68
CD44-207ENST00000425428 MRPL17Q9NRX2 175 aaKnown RBP10.78□□□□□ -0.68
CD44-207ENST00000425428 POLIQ9UNA4 740 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 FHOD1Q9Y613 1164 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 COL4A6Q14031 1691 aa10.78□□□□□ -0.68
CD44-207ENST00000425428 PPEF2O14830 753 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 AP5Z1O43299 807 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 FGF18O76093 207 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 CA3P07451 260 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 WARSP23381 471 aaKnown RBP10.77□□□□□ -0.68
CD44-207ENST00000425428 ASPAP45381 313 aa10.77□□□□□ -0.68
CD44-207ENST00000425428 BRCC3P46736 316 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms