RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CEP85Q6P2H3 762 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 LINC00482Q8N8I6 264 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 OR2I1PQ8NGU4 316 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 GAB3Q8WWW8 586 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 GTPBP4Q9BZE4 634 aaKnown RBP7.52□□□□□ -1.2
USP40-202ENST00000409945 IFT122Q9HBG6 1241 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 ANKRD6Q9Y2G4 727 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 CDY2AQ9Y6F7 541 aa7.52□□□□□ -1.2
USP40-202ENST00000409945 POLR2AP24928 1970 aaKnown RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 E2F8A0AVK6 867 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 ETV2O00321 342 aaPredicted RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 HSPA1AP0DMV8 641 aaKnown RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 HSPA1BP0DMV9 641 aaKnown RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 PHKA1P46020 1223 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 IRAK1P51617 712 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 STAT5BP51692 787 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 MRPS9P82933 396 aaKnown RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 B3GNT9Q6UX72 402 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 CLASRPQ8N2M8 674 aaKnown RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 ZBED3Q96IU2 234 aaPredicted RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 PRMT6Q96LA8 375 aaPredicted RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 TMEM209Q96SK2 561 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 HAPLN2Q9GZV7 340 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 SPATA6Q9NWH7 488 aaPredicted RBP7.52□□□□□ -1.21
USP40-202ENST00000409945 PCDHB6Q9Y5E3 794 aa7.52□□□□□ -1.21
USP40-202ENST00000409945 ECM29Q5VYK3 1845 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 PAPPA2Q9BXP8 1791 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 A0A0A6YYJ9 748 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 JUNBP17275 347 aaPredicted RBP7.51□□□□□ -1.21
USP40-202ENST00000409945 CTCFP49711 727 aaPredicted RBP7.51□□□□□ -1.21
USP40-202ENST00000409945 PRR31Q5SQ13 230 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 FKBP1CQ5VVH2 108 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 OLFML2BQ68BL8 750 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 SPATA5Q8NB90 893 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 AUTS2Q8WXX7 1259 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 E2F7Q96AV8 911 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 KIF1BPQ96EK5 621 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 TDRD3Q9H7E2 651 aaKnown RBP7.51□□□□□ -1.21
USP40-202ENST00000409945 ZNF70Q9UC06 446 aaPredicted RBP7.51□□□□□ -1.21
USP40-202ENST00000409945 FTSJ1Q9UET6 329 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 DNAI1Q9UI46 699 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 FPGT-TNNI3KV9GXZ4 949 aa7.51□□□□□ -1.21
USP40-202ENST00000409945 ASTN2O75129 1339 aaPredicted RBP7.51□□□□□ -1.21
USP40-202ENST00000409945 TCP10L2B9ZVM9 353 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 IFIT2P09913 472 aaKnown RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 HNRNPLP14866 589 aaKnown RBP eCLIP7.5□□□□□ -1.21
USP40-202ENST00000409945 ADORA1P30542 326 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 KIF23Q02241 960 aaPredicted RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 PPP3CAQ08209 521 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 TARBP2Q15633 366 aaKnown RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 TMED8Q6PL24 325 aaPredicted RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 FAM83AQ86UY5 434 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 KYQ8NBH2 561 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 OR14C36Q8NHC7 312 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 CALML6Q8TD86 181 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 FNIP1Q8TF40 1166 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 ZBTB40Q9NUA8 1239 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 RAI14Q9P0K7 980 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 GIT1Q9Y2X7 761 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 A0A1B0GTL3 188 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 A6NNZ2 444 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 TMEM127O75204 238 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 WDHD1O75717 1129 aaPredicted RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 BAG3O95817 575 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 MESP2Q0VG99 397 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 SREBF2Q12772 1141 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 ADRM1Q16186 407 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 C3orf36Q3SXR2 165 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 MAP9Q49MG5 647 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 RRP12Q5JTH9 1297 aaKnown RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 MBNL2Q5VZF2 373 aaKnown RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 CERS3Q8IU89 383 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 CHST12Q9NRB3 414 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 SCOCQ9UIL1 159 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 KCNG1Q9UIX4 513 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 EXOC6BQ9Y2D4 811 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 PTPN22Q9Y2R2 807 aa7.5□□□□□ -1.21
USP40-202ENST00000409945 ZNF646O15015 1829 aaPredicted RBP7.5□□□□□ -1.21
USP40-202ENST00000409945 PRDX5P30044 214 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 RRP1P56182 461 aaKnown RBP7.49□□□□□ -1.21
USP40-202ENST00000409945 CD69Q07108 199 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 PRKG1Q13976 671 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 GRM3Q14832 879 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 CCDC181Q5TID7 509 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 AACSQ86V21 672 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 FAM129CQ86XR2 697 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 NUDT10Q8NFP7 164 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 RIN2Q8WYP3 895 aaPredicted RBP7.49□□□□□ -1.21
USP40-202ENST00000409945 RAB24Q969Q5 203 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 COA7Q96BR5 231 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 NUDT11Q96G61 164 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 USP40Q9NVE5 1235 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 KCMF1Q9P0J7 381 aa7.49□□□□□ -1.21
USP40-202ENST00000409945 CCDC194A0A1B0GVG4 234 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 UBE2Q2LH0YL09 131 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 AP1G1O43747 822 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 KLHL18O94889 574 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 PFKLP17858 780 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 INHBEP58166 350 aa7.48□□□□□ -1.21
USP40-202ENST00000409945 OTUD7BQ6GQQ9 843 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms