RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ALDH2P05091 517 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 MYOGP15173 224 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 DSC1Q08554 894 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 ASTE1Q2TB18 679 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-204ENST00000409441 TEX35Q5T0J7 233 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 PAPD7Q5XG87 772 aaKnown RBP14.39□□□□□ -0.11
LIMS1-204ENST00000409441 SCARA3Q6AZY7 606 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 COLGALT2Q8IYK4 626 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 FIBCD1Q8N539 461 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 C1orf127Q8N9H9 656 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 GANQ9H2C0 597 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 CWH43Q9H720 699 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 GOLGA2P5Q9HBQ8 144 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 LUC7LQ9NQ29 371 aaKnown RBP14.39□□□□□ -0.11
LIMS1-204ENST00000409441 AIPL1Q9NZN9 384 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 DNAJB4Q9UDY4 337 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 TRIM10Q9UDY6 481 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 FBXL5Q9UKA1 691 aa14.39□□□□□ -0.11
LIMS1-204ENST00000409441 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-204ENST00000409441 LCHNA4D1U4 455 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CASTOR2A6NHX0 329 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 ZNF263O14978 683 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 PHACTR2O75167 634 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CST3P01034 146 aaPredicted RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 RPL9P32969 192 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CLCNKBP51801 687 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 BIRC3Q13489 604 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 ZACNQ401N2 412 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CBWD6Q4V339 395 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CBWD3Q5JTY5 395 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CBWD5Q5RIA9 395 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 SPOUT1Q5T280 376 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 TDRD10Q5VZ19 366 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 HGSNATQ68CP4 663 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 KRT39Q6A163 491 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 C15orf39Q6ZRI6 1047 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 SECISBP2LQ93073 1101 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 DDX27Q96GQ7 796 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 LACRTQ9GZZ8 138 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 TMEM8AQ9HCN3 771 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CACNG4Q9UBN1 327 aa14.38□□□□□ -0.11
LIMS1-204ENST00000409441 MRPL42Q9Y6G3 142 aaKnown RBP14.38□□□□□ -0.11
LIMS1-204ENST00000409441 CTAGE15A4D2H0 777 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ATP8B1O43520 1251 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ZC3H11AO75152 810 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TACC1O75410 805 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ITGB3P05106 788 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TUBBP07437 444 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 PLEKP08567 350 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 KRT19P08727 400 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CTAGE8P0CG41 777 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 LRPAP1P30533 357 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 MAGEA1P43355 309 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 OR1G1P47890 313 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 FMO5P49326 533 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ALDH7A1P49419 539 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CLCN6P51797 869 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 POLR2FP61218 127 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 RBP5P82980 135 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 UPP1Q16831 310 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 GLIPR1L2Q4G1C9 344 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 C9orf57Q5W0N0 161 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CTAGE6Q86UF2 777 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CTAGE4Q8IX94 777 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TRIM58Q8NG06 486 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CXorf38Q8TB03 319 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 RPGRIP1Q96KN7 1286 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 UROC1Q96N76 676 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 PAAF1Q9BRP4 392 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 NLRC4Q9NPP4 1024 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 SIX4Q9UIU6 781 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ITGA11Q9UKX5 1188 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 AGAP1Q9UPQ3 857 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 COLQQ9Y215 455 aaPredicted RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 FAN1Q9Y2M0 1017 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 DAAM1Q9Y4D1 1078 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 PCDHA11Q9Y5I1 949 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CITO14578 2027 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 RCCD1A6NED2 376 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 PIRO00625 290 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 GALTP07902 379 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ANXA13P27216 316 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 POLR2BP30876 1174 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 PBX2P40425 430 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 MXI1P50539 228 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 BCAR1P56945 870 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CYP27A1Q02318 531 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 CKAP4Q07065 602 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TRPC3Q13507 836 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 BMS1Q14692 1282 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ASIC2Q16515 512 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 EXOC3L4Q17RC7 722 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 DCLRE1AQ6PJP8 1040 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TMCO3Q6UWJ1 677 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 GBP6Q6ZN66 633 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 TMEM175Q9BSA9 504 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 FAM53CQ9NYF3 392 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 SAR1BQ9Y6B6 198 aa14.37□□□□□ -0.11
LIMS1-204ENST00000409441 BZW2Q9Y6E2 419 aaKnown RBP14.37□□□□□ -0.11
LIMS1-204ENST00000409441 ATP8B3O60423 1300 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms