RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 DDX20Q9UHI6 824 aaKnown RBP19.54■□□□□ 0.72
USP48-204ENST00000400301 LENG9Q96B70 501 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 CGRRF1Q99675 332 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 OGTO15294 1046 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 RGS7P49802 495 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 NLRP11P59045 1033 aaKnown RBP19.54■□□□□ 0.72
USP48-204ENST00000400301 ABRAQ8N0Z2 381 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 LRRC57Q8N9N7 239 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 SHC3Q92529 594 aa19.54■□□□□ 0.72
USP48-204ENST00000400301 ZBTB45Q96K62 511 aaPredicted RBP19.54■□□□□ 0.72
USP48-204ENST00000400301 SMG5Q9UPR3 1016 aaKnown RBP19.54■□□□□ 0.72
USP48-204ENST00000400301 LAMA4Q16363 1823 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 RBP3P10745 1247 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 GARSP41250 739 aaKnown RBP19.53■□□□□ 0.72
USP48-204ENST00000400301 DEPDC1BQ8WUY9 529 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 SLC10A4Q96EP9 437 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 ZFP69BQ9UJL9 534 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 NUB1Q9Y5A7 615 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 GRAP2O75791 330 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 KCNV1Q6PIU1 500 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 PALB2Q86YC2 1186 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 DDX23Q9BUQ8 820 aaKnown RBP19.53■□□□□ 0.72
USP48-204ENST00000400301 SLIT2O94813 1529 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 H0Y3Z8 333 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 LPXNO60711 386 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 KRT38O76015 456 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 TTC4O95801 387 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 CHST7Q9NS84 486 aa19.53■□□□□ 0.72
USP48-204ENST00000400301 ATP5HO75947 161 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 DGKZQ13574 1117 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 UGCGQ16739 394 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 VSIG10LQ86VR7 867 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 SMARCAD1Q9H4L7 1026 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 SIPA1L3O60292 1781 aaPredicted RBP19.52■□□□□ 0.72
USP48-204ENST00000400301 ROBO1Q9Y6N7 1651 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 FLT3P36888 993 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 SLC12A2P55011 1212 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 MYL6P60660 151 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 FMO1Q01740 532 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 SPIRE1Q08AE8 756 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 CCNG2Q16589 344 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 SIX6OS1Q8N1H7 587 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 FAM84AQ96KN4 292 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 CYTH2Q99418 400 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 KLF6Q99612 283 aaPredicted RBP19.52■□□□□ 0.72
USP48-204ENST00000400301 DHX35Q9H5Z1 703 aaKnown RBP19.52■□□□□ 0.72
USP48-204ENST00000400301 F5H423 210 aaPredicted RBP19.52■□□□□ 0.72
USP48-204ENST00000400301 MAP7D1Q3KQU3 841 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 DEFB132Q7Z7B7 95 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 EXD1Q8NHP7 514 aa19.52■□□□□ 0.72
USP48-204ENST00000400301 PSMC3IPQ9P2W1 217 aaPredicted RBP19.52■□□□□ 0.72
USP48-204ENST00000400301 SHBGP04278 402 aa19.52■□□□□ 0.71
USP48-204ENST00000400301 KCNT1Q5JUK3 1230 aa19.52■□□□□ 0.71
USP48-204ENST00000400301 C3orf62Q6ZUJ4 267 aa19.52■□□□□ 0.71
USP48-204ENST00000400301 SPATA18Q8TC71 538 aa19.52■□□□□ 0.71
USP48-204ENST00000400301 ASTN2O75129 1339 aaPredicted RBP19.51■□□□□ 0.71
USP48-204ENST00000400301 MYH3P11055 1940 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 CICQ96RK0 1608 aaPredicted RBP19.51■□□□□ 0.71
USP48-204ENST00000400301 JAM2P57087 298 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 ORC1Q13415 861 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 TAF11Q15544 211 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 GEN1Q17RS7 908 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 DUPD1Q68J44 220 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 EFCAB12Q6NXP0 572 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 CCDC60Q8IWA6 550 aaPredicted RBP19.51■□□□□ 0.71
USP48-204ENST00000400301 TUBB6Q9BUF5 446 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 DCLK3Q9C098 648 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 RAB6BQ9NRW1 208 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 CHMP2BQ9UQN3 213 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 AKAP11Q9UKA4 1901 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 DSG3P32926 999 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 ATG16L1Q676U5 607 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 ZNF606Q8WXB4 792 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 PPARGC1AQ9UBK2 798 aaKnown RBP19.51■□□□□ 0.71
USP48-204ENST00000400301 PNMA3Q9UL41 463 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 TRAPPC3O43617 180 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 DNAJC3Q13217 504 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 KIF2BQ8N4N8 673 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 PGM2Q96G03 612 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 ACAP3Q96P50 834 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 NCAPGQ9BPX3 1015 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 SLC13A1Q9BZW2 595 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 CISHQ9NSE2 258 aa19.51■□□□□ 0.71
USP48-204ENST00000400301 GJB6O95452 261 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 SMC1BQ8NDV3 1235 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 SCYL1Q96KG9 808 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 SH3GL2Q99962 352 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 METTL5Q9NRN9 209 aaKnown RBP19.5■□□□□ 0.71
USP48-204ENST00000400301 XPO7Q9UIA9 1087 aaKnown RBP19.5■□□□□ 0.71
USP48-204ENST00000400301 AJAP1Q9UKB5 411 aaPredicted RBP19.5■□□□□ 0.71
USP48-204ENST00000400301 SNX9Q9Y5X1 595 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 CCDC160A6NGH7 325 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 A8MXQ7 604 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 KCNN4O15554 427 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 PPFIA2O75334 1257 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 BEST2Q8NFU1 509 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 UBA3Q8TBC4 463 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 VCXQ9H320 206 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 SIX2Q9NPC8 291 aa19.5■□□□□ 0.71
USP48-204ENST00000400301 AVENQ9NQS1 362 aaPredicted RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms