RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 GJD2Q9UKL4 321 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 SLC27A5Q9Y2P5 690 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 IPPQ9Y573 584 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 MYH15Q9Y2K3 1946 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 FAM155AB1AL88 458 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CREB3O43889 395 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 C22orf31O95567 290 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PLEKP08567 350 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ATP4AP20648 1035 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 C4orf50Q6ZRC1 276 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ZNF410Q86VK4 478 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ELMOD1Q8N336 334 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 EHBP1Q8NDI1 1231 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 TNIP3Q96KP6 325 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 GDAP1L1Q96MZ0 367 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 NT5C1AQ9BXI3 368 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 HEMGNQ9BXL5 484 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 DHX33Q9H6R0 707 aaKnown RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ANAPC7Q9UJX3 599 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 NAGPAQ9UK23 515 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ADAMTS5Q9UNA0 930 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PACSIN2Q9UNF0 486 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-205ENST00000392004 ARHGEF37A1IGU5 675 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 LRRD1A4D1F6 860 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 SMIM23A6NLE4 172 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 MED7O43513 233 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 MOCS3O95396 460 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 LIG3P49916 1009 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PPP3CAQ08209 521 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 RPS6KA1Q15418 735 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CBWD6Q4V339 395 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CBWD3Q5JTY5 395 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CBWD5Q5RIA9 395 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PLPP4Q5VZY2 271 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 WSCD1Q658N2 575 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 OVOS1Q6IE37 1185 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 CENPPQ6IPU0 288 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 TRPV1Q8NER1 839 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 BADQ92934 168 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 PPP2R3CQ969Q6 453 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 C16orf70Q9BSU1 422 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 SPON2Q9BUD6 331 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 AAASQ9NRG9 546 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 APEX2Q9UBZ4 518 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 COMMD10Q9Y6G5 202 aa10.93□□□□□ -0.66
COL6A3-205ENST00000392004 COL5A3P25940 1745 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SRGAP2O75044 1071 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SRGAP2BP0DMP2 458 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CTGFP29279 349 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CCT5P48643 541 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 YWHAHQ04917 246 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SNX1Q13596 522 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 PPP1R7Q15435 360 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SMAD1Q15797 465 aaKnown RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 MDH1BQ5I0G3 518 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SEL1L2Q5TEA6 688 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 WDR93Q6P2C0 686 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 FIBCD1Q8N539 461 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 RPGRIP1Q96KN7 1286 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 ACO2Q99798 780 aaKnown RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 TMEM8AQ9HCN3 771 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 WBP1LQ9NX94 342 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 DDX43Q9NXZ2 648 aaKnown RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SAR1BQ9Y6B6 198 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 ASTN1O14525 1302 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 TTLL13PA6NNM8 815 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 KLRC4O43908 158 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 GNRH1P01148 92 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 RABGGTBP53611 331 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SPIRE1Q08AE8 756 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 NOMO2Q5JPE7 1267 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CAPN12Q6ZSI9 719 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 MAP4K3Q8IVH8 894 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CCDC33Q8N5R6 958 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 NIF3L1Q9GZT8 377 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 TMEM117Q9H0C3 514 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 NUCKS1Q9H1E3 243 aaKnown RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 TUBGCP4Q9UGJ1 667 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 UMODL1Q5DID0 1318 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA6L10A0A0M3HER8 536 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 A0A0U1RQJ8 604 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SMIM35A0A1B0GVV1 85 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 GOLGA6BA6NDN3 693 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 AP1G2O75843 785 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 MAP3K6O95382 1288 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 MYL4P12829 197 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CYBAP13498 195 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 PSMA2P25787 234 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 ADGRF2Q8IZF7 708 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 SPIRE2Q8WWL2 714 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 ATRIPQ8WXE1 791 aa10.92□□□□□ -0.66
COL6A3-205ENST00000392004 AGO3Q9H9G7 860 aaKnown RBP10.92□□□□□ -0.66
COL6A3-205ENST00000392004 CKMP06732 381 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 MAPTP10636 758 aaKnown RBP10.91□□□□□ -0.66
COL6A3-205ENST00000392004 ALDH1A3P47895 512 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 MAP3K7CLP57077 242 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 SV2CQ496J9 727 aa10.91□□□□□ -0.66
COL6A3-205ENST00000392004 DAW1Q8N136 415 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms