RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 EXOC3L4Q17RC7 722 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TDRD12Q587J7 1177 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 ZNF697Q5TEC3 545 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TCERG1LQ5VWI1 586 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PAPD7Q5XG87 772 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 PDE12Q6L8Q7 609 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 DPY19L2P1Q6NXN4 242 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 KCNT2Q6UVM3 1135 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 INTS8Q75QN2 995 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 COLGALT2Q8IYK4 626 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 GPR65Q8IYL9 337 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 FAM186BQ8IYM0 893 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 COLEC11Q9BWP8 271 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 LMAN2LQ9H0V9 348 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 EPC1Q9H2F5 836 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 IKZF4Q9H2S9 585 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 NKX2-4Q9H2Z4 354 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 NRDE2Q9H7Z3 1164 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 ZNF446Q9NWS9 450 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 SPG21Q9NZD8 308 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 AIPL1Q9NZN9 384 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 FAN1Q9Y2M0 1017 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 MYH11P35749 1972 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 ANO9A1A5B4 782 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 GTPBP10A4D1E9 387 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 LCHNA4D1U4 455 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 CTAGE15A4D2H0 777 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 LACTBL1A8MY62 500 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TISP43B9A030 160 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PJA2O43164 708 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 GALTP07902 379 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 CTAGE8P0CG41 777 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 MYOGP15173 224 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 SLC9A1P19634 815 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 IBSPP21815 317 aaPredicted RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 PON1P27169 355 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TNFSF9P41273 254 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 MAGEA1P43355 309 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 BCAR1P56945 870 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PSMD6Q15008 389 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 NAB2Q15742 525 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 ASIC2Q16515 512 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PAN2Q504Q3 1202 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 EPC2Q52LR7 807 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 SPOUT1Q5T280 376 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 KLHDC7AQ5VTJ3 777 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 DCLRE1AQ6PJP8 1040 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 GBP6Q6ZN66 633 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 CTAGE6Q86UF2 777 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 WDR49Q8IV35 697 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 CTAGE4Q8IX94 777 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 BEST2Q8NFU1 509 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TRIM58Q8NG06 486 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TMC2Q8TDI7 906 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 FNBP1Q96RU3 617 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PCIF1Q9H4Z3 704 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 OGFRQ9NZT2 677 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 KLK14Q9P0G3 267 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 SAR1BQ9Y6B6 198 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 H3BNC9 293 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 TRAPPC3O43617 180 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 UCHL3P15374 230 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 POU3F3P20264 500 aaPredicted RBP10.93□□□□□ -0.66
VPS53-202ENST00000389040 LRPAP1P30533 357 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 GATMP50440 423 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 CYP2J2P51589 502 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 CYP24A1Q07973 514 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 ELAVL2Q12926 359 aaKnown RBP10.93□□□□□ -0.66
VPS53-202ENST00000389040 TMEM132DQ14C87 1099 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 DUOXA2Q1HG44 320 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 TMCO3Q6UWJ1 677 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 COLGALT1Q8NBJ5 622 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 SAAL1Q96ER3 474 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 KIF12Q96FN5 646 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 MIOSQ9NXC5 875 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 GCNT4Q9P109 453 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 FBXL5Q9UKA1 691 aa10.93□□□□□ -0.66
VPS53-202ENST00000389040 ARHGEF37A1IGU5 675 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ZC3H11AO75152 810 aaKnown RBP eCLIP10.92□□□□□ -0.66
VPS53-202ENST00000389040 TACC1O75410 805 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 DDHD2O94830 711 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 KRT13P13646 458 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 GTF2H1P32780 548 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 CTNNB1P35222 781 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 AFF1P51825 1210 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 ARID5AQ03989 594 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 KLHL30Q0D2K2 578 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 SLC18A3Q16572 532 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 PTPROQ16827 1216 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 UPP1Q16831 310 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ZBTB41Q5SVQ8 909 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ZNF280BQ86YH2 543 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 CBWD2Q8IUF1 395 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 SLC39A11Q8N1S5 342 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 FBXO22Q8NEZ5 403 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 TMEM169Q96HH4 297 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 ZMAT2Q96NC0 199 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 SPAG5Q96R06 1193 aa10.92□□□□□ -0.66
VPS53-202ENST00000389040 LUC7LQ9NQ29 371 aaKnown RBP10.92□□□□□ -0.66
VPS53-202ENST00000389040 SSX2IPQ9Y2D8 614 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms