RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RBBP8NLQ8NC74 664 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-202ENST00000375299 KCNH7Q9NS40 1196 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 PCDHB2Q9Y5E7 798 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 RGPD3A6NKT7 1758 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-202ENST00000375299 RGPD4Q7Z3J3 1758 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 A0A1W2PPM1 405 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 UPP2O95045 317 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 RXRBP28702 533 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 YWHABP31946 246 aaKnown RBP22.34■■□□□ 1.17
UPF3A-202ENST00000375299 KLC1Q07866 573 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 RASA2Q15283 850 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 SGSM1Q2NKQ1 1148 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 LIN9Q5TKA1 542 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 CAPN12Q6ZSI9 719 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 USP37Q86T82 979 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 MAP4K3Q8IVH8 894 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 CFAP61Q8NHU2 1237 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 MAK16Q9BXY0 300 aaKnown RBP22.34■■□□□ 1.17
UPF3A-202ENST00000375299 NPHS2Q9NP85 383 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 PSMC3IPQ9P2W1 217 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-202ENST00000375299 DNPEPQ9ULA0 475 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 ZBTB21Q9ULJ3 1066 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 USTQ9Y2C2 406 aa22.34■■□□□ 1.17
UPF3A-202ENST00000375299 ZNF646O15015 1829 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 DHX15O43143 795 aaKnown RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 LYPLA2O95372 231 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 MMP10P09238 476 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 ZSCAN5DPP0CG00 497 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 SARNPP82979 210 aaKnown RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 CYP24A1Q07973 514 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 CTC1Q2NKJ3 1217 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 MUM1Q2TAK8 710 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 EAPPQ56P03 285 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 C4orf50Q6ZRC1 276 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 CLNKQ7Z7G1 428 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 MIPEPQ99797 713 aa22.33■■□□□ 1.17
UPF3A-202ENST00000375299 TDRD3Q9H7E2 651 aaKnown RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 SSU72Q9NP77 194 aaKnown RBP22.33■■□□□ 1.17
UPF3A-202ENST00000375299 TMEM150BA6NC51 233 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 ZC3H11AO75152 810 aaKnown RBP eCLIP22.33■■□□□ 1.16
UPF3A-202ENST00000375299 ZWINTO95229 277 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 NPTXRO95502 500 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 NEFHP12036 1026 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 SSR1P43307 286 aaKnown RBP22.33■■□□□ 1.16
UPF3A-202ENST00000375299 TUBP50607 506 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 ARSEP51690 589 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 MTDHQ86UE4 582 aaKnown RBP22.33■■□□□ 1.16
UPF3A-202ENST00000375299 FBXL18Q96ME1 805 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 C11orf70Q9BRQ4 267 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 C1orf112Q9NSG2 853 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 STOML1Q9UBI4 398 aa22.33■■□□□ 1.16
UPF3A-202ENST00000375299 SPDYE5A6NIY4 337 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ALOX15BO15296 676 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 TROVE2P10155 538 aaKnown RBP eCLIP22.32■■□□□ 1.16
UPF3A-202ENST00000375299 CETN2P41208 172 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 MXRA7P84157 204 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 MORF4L2Q15014 288 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 FAM102BQ5T8I3 360 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ZBED8Q8IZ13 594 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ALLCQ8N6M5 410 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 TMEM161BQ8NDZ6 487 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 MRRFQ96E11 262 aaKnown RBP22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ZNF333Q96JL9 665 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 MRPL47Q9HD33 250 aaKnown RBP22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ZNF148Q9UQR1 794 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 NFASCO94856 1347 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 NFX1Q12986 1120 aaKnown RBP22.32■■□□□ 1.16
UPF3A-202ENST00000375299 GPS1Q13098 491 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 MAPK6Q16659 721 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 DRICH1Q6PGQ1 229 aaPredicted RBP22.32■■□□□ 1.16
UPF3A-202ENST00000375299 KRT27Q7Z3Y8 459 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ZBTB10Q96DT7 871 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 SYT15Q9BQS2 421 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 ANKFY1Q9P2R3 1169 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 NUMBLQ9Y6R0 609 aa22.32■■□□□ 1.16
UPF3A-202ENST00000375299 NVLO15381 856 aaKnown RBP22.31■■□□□ 1.16
UPF3A-202ENST00000375299 ETS1P14921 441 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 VHLP40337 213 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 BPIFB4P59827 614 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 MAMLD1Q13495 774 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 AOC3Q16853 763 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 RFWD3Q6PCD5 774 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 ACER1Q8TDN7 264 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 TSC22D3Q99576 134 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KIFC3Q9BVG8 833 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 CADM1Q9BY67 442 aaKnown RBP22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KLHL11Q9NVR0 708 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 NMRK1Q9NWW6 199 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KRT10P13645 584 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KRT4P19013 534 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 SPP2Q13103 211 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KHDC1Q4VXA5 237 aaKnown RBP22.31■■□□□ 1.16
UPF3A-202ENST00000375299 PLEKHG4Q58EX7 1191 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 EFHC2Q5JST6 749 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 THEMIS2Q5TEJ8 643 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KAZNQ674X7 775 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 TMEM154Q6P9G4 183 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 CENPUQ71F23 418 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 CHURC1Q8WUH1 139 aa22.31■■□□□ 1.16
UPF3A-202ENST00000375299 KANSL3Q9P2N6 904 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms