RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TCEAL1Q15170 157 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 TTMPQ5BVD1 217 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 CHRDL2Q6WN34 429 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 RPAINQ86UA6 219 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 SLC47A2Q86VL8 602 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 UBL4BQ8N7F7 174 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 ARL8AQ96BM9 186 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 PCDHB18PQ96TA0 734 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 TOPORSQ9NS56 1045 aaPredicted RBP16.59■□□□□ 0.25
CCDC40-202ENST00000374876 RAB20Q9NX57 234 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 UTP11Q9Y3A2 253 aaKnown RBP16.59■□□□□ 0.25
CCDC40-202ENST00000374876 ADGRA3Q8IWK6 1321 aa16.59■□□□□ 0.25
CCDC40-202ENST00000374876 MIF4GDA9UHW6 222 aaKnown RBP16.58■□□□□ 0.25
CCDC40-202ENST00000374876 H0YCG3 227 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 MRPS6P82932 125 aaKnown RBP16.58■□□□□ 0.25
CCDC40-202ENST00000374876 EMC2Q15006 297 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 PPP2R5EQ16537 467 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 KIZQ2M2Z5 673 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 IER5Q5VY09 327 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 NAA35Q5VZE5 725 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 LRRC31Q6UY01 552 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 DDX42Q86XP3 938 aaKnown RBP eCLIP16.58■□□□□ 0.25
CCDC40-202ENST00000374876 GPD1LQ8N335 351 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 NME8Q8N427 588 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 TAS1R2Q8TE23 839 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 POLR3FQ9H1D9 316 aaPredicted RBP16.58■□□□□ 0.25
CCDC40-202ENST00000374876 XPNPEP1Q9NQW7 623 aa16.58■□□□□ 0.25
CCDC40-202ENST00000374876 ZNF233A6NK53 670 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 TMEM110-MUSTN1A8MSY1 372 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 TTI1O43156 1089 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 GARTP22102 1010 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 ECHS1P30084 290 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 ABCD1P33897 745 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 RFC5P40937 340 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 PDE6CP51160 858 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 NLRP11P59045 1033 aaKnown RBP16.58■□□□□ 0.24
CCDC40-202ENST00000374876 MGAT3Q09327 533 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 FAM26DQ5JW98 314 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 HELQQ8TDG4 1101 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 PIK3R5Q8WYR1 880 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 LRRC45Q96CN5 670 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 FAM213AQ9BRX8 229 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 UBE2OQ9C0C9 1292 aaKnown RBP16.58■□□□□ 0.24
CCDC40-202ENST00000374876 TET1Q8NFU7 2136 aa16.58■□□□□ 0.24
CCDC40-202ENST00000374876 BHMG1C9JSJ3 638 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 SHOX2O60902 331 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CAND2O75155 1236 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 MMEP08473 750 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CYP11B1P15538 503 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ZNF211Q13398 564 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 PPIGQ13427 754 aaKnown RBP eCLIP16.57■□□□□ 0.242e-6■■■□□ 15
CCDC40-202ENST00000374876 SV2AQ7L0J3 742 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 RHPN2Q8IUC4 686 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CD302Q8IX05 232 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ALG3Q92685 438 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CELF4Q9BZC1 486 aaKnown RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 IL23AQ9NPF7 189 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ACP6Q9NPH0 428 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 KCNG1Q9UIX4 513 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ARID2Q68CP9 1835 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 DAPK3O43293 454 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 GPR32O75388 356 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 GHRP10912 638 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 PTENP60484 403 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 FMO1Q01740 532 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CDR2Q01850 454 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 MESDQ14696 234 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ZNF365Q70YC5 407 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 ADAT2Q7Z6V5 191 aaKnown RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 PRPF31Q8WWY3 499 aaKnown RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 RPS6KC1Q96S38 1066 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 JPH2Q9BR39 696 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-202ENST00000374876 CAPS2Q9BXY5 557 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 FAM114A2Q9NRY5 505 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 PPME1Q9Y570 386 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 TRPV2Q9Y5S1 764 aa16.57■□□□□ 0.24
CCDC40-202ENST00000374876 M0QZ92 97 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 MTA2O94776 668 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 LIG4P49917 911 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 ENPEPQ07075 957 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 TCTN1Q2MV58 587 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 C9orf50Q5SZB4 431 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 PRPF38BQ5VTL8 546 aaKnown RBP16.56■□□□□ 0.24
CCDC40-202ENST00000374876 KCTD16Q68DU8 428 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 EXOC8Q8IYI6 725 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 TMEM40Q8WWA1 233 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 OSMRQ99650 979 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 ZSWIM1Q9BR11 485 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 RAB17Q9H0T7 212 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 ARHGAP28Q9P2N2 729 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 CHORDC1Q9UHD1 332 aaPredicted RBP16.56■□□□□ 0.24
CCDC40-202ENST00000374876 PLAAQ9Y263 795 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 NR2E1Q9Y466 385 aa16.56■□□□□ 0.24
CCDC40-202ENST00000374876 ATMINO43313 823 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 CSDE1O75534 798 aaKnown RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 KRT5P13647 590 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 COMTP21964 271 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 DR1Q01658 176 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 STRN3Q13033 797 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 DNAJC21Q5F1R6 531 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms