RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ANGPT2O15123 496 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 SPRP35270 261 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 COILP38432 576 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 CORO7P57737 925 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 SZRD1Q7Z422 152 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 DAGLBQ8NCG7 672 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 TPCN2Q8NHX9 752 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 RBM46Q8TBY0 533 aaKnown RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 SCFD1Q8WVM8 642 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 MED15Q96RN5 788 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 MXRA8Q9BRK3 442 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 CHCHD3Q9NX63 227 aaKnown RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 TFR2Q9UP52 801 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PSMD3O43242 534 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 HSD17B3P37058 310 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 CDC42EP1Q00587 391 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PRUNE1Q86TP1 453 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 NAF1Q96HR8 494 aaKnown RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 PNKPQ96T60 521 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 THTPAQ9BU02 230 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 UNC45AQ9H3U1 944 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 ANKEF1Q9NU02 776 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 NDFIP2Q9NV92 336 aa11.98□□□□□ -0.49
PTPRF-203ENST00000372407 CNOT7Q9UIV1 285 aaKnown RBP11.98□□□□□ -0.49
PTPRF-203ENST00000372407 GPR75-ASB3A0A0A6YYF3 556 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MYO1DO94832 1006 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 PLEKP08567 350 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 ENO3P13929 434 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MAPK7Q13164 816 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 INPP5AQ14642 412 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 USP10Q14694 798 aaKnown RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 SYCP2LQ5T4T6 812 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 ELMSAN1Q6PJG2 1045 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CATSPER3Q86XQ3 398 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 URGCPQ8TCY9 931 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 SERPINB12Q96P63 405 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MMTAG2Q9BU76 263 aaKnown RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 SMARCAD1Q9H4L7 1026 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 GRID1Q9ULK0 1009 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 AURKCQ9UQB9 309 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 NEMP1O14524 444 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CSPG5O95196 566 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CYP11B2P19099 503 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 PLA2G4AP47712 749 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 PPP4CP60510 307 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MTMR2Q13614 643 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 TMEM132DQ14C87 1099 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CYTH1Q15438 398 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MICALL2Q8IY33 904 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 FEZF2Q8TBJ5 459 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CMTM5Q96DZ9 223 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 KLF6Q99612 283 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 TEX12Q9BXU0 123 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MRPL1Q9BYD6 325 aaKnown RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 NIF3L1Q9GZT8 377 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 AGPAT3Q9NRZ7 376 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 PCMTD2Q9NV79 361 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 IGSF9BQ9UPX0 1349 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 DFFAO00273 331 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MAGEB2O15479 319 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 KIF1CO43896 1103 aaKnown RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 DNAJC6O75061 913 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 MKRN4PQ13434 485 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 TAS2R42Q7RTR8 314 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 PPHLN1Q8NEY8 458 aaKnown RBP11.97□□□□□ -0.49
PTPRF-203ENST00000372407 CLMNQ96JQ2 1002 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 NT5C1AQ9BXI3 368 aa11.97□□□□□ -0.49
PTPRF-203ENST00000372407 KNDC1Q76NI1 1749 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 EMC2Q15006 297 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 TRIP10Q15642 601 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 COBLL1Q53SF7 1204 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 PLA2G4FQ68DD2 849 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 LVRNQ6Q4G3 990 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 PTF1AQ7RTS3 328 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 GANCQ8TET4 914 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 FUCA2Q9BTY2 467 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-203ENST00000372407 MAN1A2O60476 641 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 RFC5P40937 340 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 NPEPPSP55786 919 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 PRKCEQ02156 737 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 C9orf131Q5VYM1 1079 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 TTI2Q6NXR4 508 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 FASTKD5Q7L8L6 764 aaKnown RBP11.96□□□□□ -0.49
PTPRF-203ENST00000372407 SCFD2Q8WU76 684 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 THAP11Q96EK4 314 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 TSPAN17Q96FV3 270 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 LACRTQ9GZZ8 138 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 KBTBD4Q9NVX7 518 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 TJP2Q9UDY2 1190 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 PRKAG2Q9UGJ0 569 aa11.96□□□□□ -0.49
PTPRF-203ENST00000372407 C19orf81C9J6K1 198 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 RALAP11233 206 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 LRRC36Q1X8D7 754 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 TKFCQ3LXA3 575 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 MDH1BQ5I0G3 518 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 C6orf10Q5SRN2 563 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 GPAT2Q6NUI2 795 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 XRRA1Q6P2D8 792 aa11.96□□□□□ -0.5
PTPRF-203ENST00000372407 TRIM65Q6PJ69 517 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms