RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SENP8Q96LD8 212 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TBC1D13Q9NVG8 400 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 APEX2Q9UBZ4 518 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 CXCL10P02778 98 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 SH3RF1Q7Z6J0 888 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 ENGASEQ8NFI3 743 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 E2F7Q96AV8 911 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 EIF2AQ9BY44 585 aaKnown RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 SMIM28A0A1B0GU29 152 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 ACTN2P35609 894 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 MTHFRP42898 656 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 HASPINQ8TF76 798 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TLR8Q9NR97 1041 aaKnown RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 WDR35Q9P2L0 1181 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 BARX2Q9UMQ3 279 aaPredicted RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 A0A0B4J269 797 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 ADCY5O95622 1261 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TRIM49P0CI25 452 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TRIM49CP0CI26 452 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 SETSIPP0DME0 302 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 CSH1P0DML2 217 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 CSH2P0DML3 217 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 KCNE1P15382 129 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 PPP2R5DQ14738 602 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 GOLGA7BQ2TAP0 167 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 SDE2Q6IQ49 451 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 DNAJC24Q6P3W2 148 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 GLYCTKQ8IVS8 523 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 ERCC4Q92889 916 aaPredicted RBP9.78□□□□□ -0.84
UPF2-202ENST00000357604 FBXL21Q9UKT6 434 aa9.78□□□□□ -0.84
UPF2-202ENST00000357604 TRIM43BA6NCK2 446 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 SLC9A3R1O14745 358 aaPredicted RBP9.77□□□□□ -0.84
UPF2-202ENST00000357604 KRT86O43790 486 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 FGF18O76093 207 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 SOD2P04179 222 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 ATP4AP20648 1035 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 DDX6P26196 483 aaKnown RBP eCLIP9.77□□□□□ -0.84
UPF2-202ENST00000357604 CDK17Q00537 523 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 LRRC31Q6UY01 552 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 TRIM43Q96BQ3 446 aaPredicted RBP9.77□□□□□ -0.84
UPF2-202ENST00000357604 MFSD14AQ96MC6 490 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 NECTIN4Q96NY8 510 aa9.77□□□□□ -0.84
UPF2-202ENST00000357604 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.77□□□□□ -0.843e-11■■□□□ 12.6
UPF2-202ENST00000357604 KIF2AO00139 706 aaPredicted RBP9.77□□□□□ -0.85
UPF2-202ENST00000357604 RNF8O76064 485 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 SERPING1P05155 500 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 SLC2A3P11169 496 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 PDE4CQ08493 712 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 KIF5AQ12840 1032 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 KRT31Q15323 416 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 UBL4BQ8N7F7 174 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 CTTNBP2NLQ9P2B4 639 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 LIMA1Q9UHB6 759 aaKnown RBP9.77□□□□□ -0.85
UPF2-202ENST00000357604 ASB3Q9Y575 518 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 GTPBP10A4D1E9 387 aaKnown RBP9.77□□□□□ -0.85
UPF2-202ENST00000357604 TACC1O75410 805 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 PAEPP09466 180 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 MYL4P12829 197 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 BCAT1P54687 386 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 KRT81Q14533 505 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 ARSHQ5FYA8 562 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 RNF219Q5W0B1 726 aaPredicted RBP9.77□□□□□ -0.85
UPF2-202ENST00000357604 MAP7D3Q8IWC1 876 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 GPR88Q9GZN0 384 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 NLRC4Q9NPP4 1024 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 CDC25BP30305 580 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 SLC39A12Q504Y0 691 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 SEZ6Q53EL9 994 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 TMEM240Q5SV17 173 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 CCSAPQ6IQ19 270 aaPredicted RBP9.77□□□□□ -0.85
UPF2-202ENST00000357604 B3GNT9Q6UX72 402 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 SPPL2BQ8TCT7 592 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 HPS3Q969F9 1004 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 FAM149B1Q96BN6 582 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 CASP8AP2Q9UKL3 1982 aa9.77□□□□□ -0.85
UPF2-202ENST00000357604 A0A1W2PQC6 194 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 FRMD3A2A2Y4 597 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GOLGA6CA6NDK9 693 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GOLGA6BA6NDN3 693 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 PPP1R3GB7ZBB8 358 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 NDC80O14777 642 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GOLGA6DP0CG33 693 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 AVPR1AP37288 418 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 PSEN1P49768 467 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 MDH1BQ5I0G3 518 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TMEM63BQ5T3F8 832 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 FBXO32Q969P5 355 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GOLGA6AQ9NYA3 693 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 WRAP73Q9P2S5 460 aaPredicted RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 ZNF510Q9Y2H8 683 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TRAV19A0A0A6YYK7 116 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GJB5O95377 273 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 GAS8O95995 478 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 PDGFRBP09619 1106 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 BMP8BP34820 402 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 EFHC1Q5JVL4 640 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 SEL1L2Q5TEA6 688 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 TAF3Q5VWG9 929 aa9.76□□□□□ -0.85
UPF2-202ENST00000357604 RBBP8NLQ8NC74 664 aaPredicted RBP9.76□□□□□ -0.85
UPF2-202ENST00000357604 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms