RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 DNAJC12Q9UKB3 198 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 NME7Q9Y5B8 376 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 M0QZQ0 153 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 HCRTO43612 131 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 BMPR1AP36894 532 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 POLR2FP61218 127 aaKnown RBP27.21■■□□□ 1.95
SSBP3-202ENST00000357475 WSCD1Q658N2 575 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 LIMS2Q7Z4I7 341 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 PDCL2Q8N4E4 241 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 NEK11Q8NG66 645 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 TTYH3Q9C0H2 523 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 CERS4Q9HA82 394 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 NLRC4Q9NPP4 1024 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 AAASQ9NRG9 546 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 PCDHB12Q9Y5F1 795 aa27.21■■□□□ 1.95
SSBP3-202ENST00000357475 ITIH6Q6UXX5 1313 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 FGF18O76093 207 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 PNMA6AP0CW24 399 aaPredicted RBP27.2■■□□□ 1.94
SSBP3-202ENST00000357475 TKTP29401 623 aaKnown RBP27.2■■□□□ 1.94
SSBP3-202ENST00000357475 ARHGAP44Q17R89 818 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 TMC6Q7Z403 805 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 GPIHBP1Q8IV16 184 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 KBTBD7Q8WVZ9 684 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 MSRAQ9UJ68 235 aa27.2■■□□□ 1.94
SSBP3-202ENST00000357475 CD58P19256 250 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 DNAJB2P25686 324 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 RAB30Q15771 203 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 FAM171A1Q5VUB5 890 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 SPECC1LQ69YQ0 1117 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 OSTM1Q86WC4 334 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 RNF168Q8IYW5 571 aaPredicted RBP27.19■■□□□ 1.94
SSBP3-202ENST00000357475 GPR88Q9GZN0 384 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 HMGXB4Q9UGU5 601 aa27.19■■□□□ 1.94
SSBP3-202ENST00000357475 SF3B1O75533 1304 aaKnown RBP eCLIP27.18■■□□□ 1.944e-6■■■■■ 89.5
SSBP3-202ENST00000357475 TRIOBPQ9H2D6 2365 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 TRIM21P19474 475 aaKnown RBP27.18■■□□□ 1.94
SSBP3-202ENST00000357475 GCNT1Q02742 428 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 RAPGEF1Q13905 1077 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 UBR7Q8N806 425 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 CPLX3Q8WVH0 158 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 TMEM169Q96HH4 297 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 PCDHB8Q9UN66 801 aa27.18■■□□□ 1.94
SSBP3-202ENST00000357475 HUS1O60921 280 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 GYPCP04921 128 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 ACO1P21399 889 aaKnown RBP27.17■■□□□ 1.94
SSBP3-202ENST00000357475 GOLGA8FQ08AF8 430 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 GOLGA8DPQ0D2H9 430 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 RTP2Q5QGT7 225 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 PPP2R2DQ66LE6 453 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 CEP57Q86XR8 500 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 TOP6BLQ8N6T0 577 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 APPL2Q8NEU8 664 aa27.17■■□□□ 1.94
SSBP3-202ENST00000357475 TGS1Q96RS0 853 aaKnown RBP27.17■■□□□ 1.94
SSBP3-202ENST00000357475 ALG13Q9NP73 1137 aaKnown RBP27.17■■□□□ 1.94
SSBP3-202ENST00000357475 P4HA1P13674 534 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 ERVK-21P61565 698 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 SMAD3P84022 425 aaKnown RBP27.16■■□□□ 1.94
SSBP3-202ENST00000357475 ORC1Q13415 861 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 ADGRF2Q8IZF7 708 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 CISHQ9NSE2 258 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 ODC1P11926 461 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 FGFR3P22607 806 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 TBXAS1P24557 533 aaPredicted RBP27.16■■□□□ 1.94
SSBP3-202ENST00000357475 DNAJB1P25685 340 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 PPM1AP35813 382 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 FXR1P51114 621 aaKnown RBP eCLIP27.16■■□□□ 1.94
SSBP3-202ENST00000357475 DRAP1Q14919 205 aaPredicted RBP27.16■■□□□ 1.94
SSBP3-202ENST00000357475 SPC24Q8NBT2 197 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 BAP1Q92560 729 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 TWNKQ96RR1 684 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 RTP3Q9BQQ7 232 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 CEP72Q9P209 647 aa27.16■■□□□ 1.94
SSBP3-202ENST00000357475 ATG2AQ2TAZ0 1938 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 C5orf67F2Z3F1 127 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 TRAPPC3O43617 180 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 CSPG5O95196 566 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 CALCAP01258 141 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 CYP11A1P05108 521 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 LMO2P25791 158 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 MFAP3P55082 362 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 JAM2P57087 298 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 PLCB3Q01970 1234 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 TBX2Q13207 712 aaPredicted RBP27.15■■□□□ 1.94
SSBP3-202ENST00000357475 PRPF38BQ5VTL8 546 aaKnown RBP27.15■■□□□ 1.94
SSBP3-202ENST00000357475 DDX53Q86TM3 631 aaKnown RBP27.15■■□□□ 1.94
SSBP3-202ENST00000357475 WHAMMQ8TF30 809 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 TIFAQ96CG3 184 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 FBXL5Q9UKA1 691 aa27.15■■□□□ 1.94
SSBP3-202ENST00000357475 COL4A4P53420 1690 aaPredicted RBP27.14■■□□□ 1.94
SSBP3-202ENST00000357475 EPOPA6NHQ4 379 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 FOXN3O00409 490 aaPredicted RBP27.14■■□□□ 1.94
SSBP3-202ENST00000357475 PAX3P23760 479 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 CDC25BP30305 580 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 FIGNQ5HY92 759 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 AUTS2Q8WXX7 1259 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 SHC3Q92529 594 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 FAXDC2Q96IV6 333 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 SLC28A3Q9HAS3 691 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 CYP3A43Q9HB55 503 aa27.14■■□□□ 1.94
SSBP3-202ENST00000357475 RWDD3Q9Y3V2 267 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms