RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CLIC6Q96NY7 704 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CCNB1IP1Q9NPC3 277 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ECDO95905 644 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SNRPFP62306 86 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 LGALS3BPQ08380 585 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TDRD5Q8NAT2 981 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 C1orf131Q8NDD1 294 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 RNF217Q8TC41 542 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ADAM22Q9P0K1 906 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 MYO3BQ8WXR4 1341 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TTC26A0AVF1 554 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 IFNA14P01570 189 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 DDR2Q16832 855 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 PARP6Q2NL67 630 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TMA16Q96EY4 203 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 KCND2Q9NZV8 630 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TRPM1Q7Z4N2 1603 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 WDR17Q8IZU2 1322 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CASP5P51878 434 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 KIF22Q14807 665 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 CCNYQ8ND76 341 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 TSPAN14Q8NG11 270 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 SNIP1Q8TAD8 396 aaKnown RBP13.16□□□□□ -0.3
COL6A3-203ENST00000353578 ULK4Q96C45 1275 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 GPAMQ9HCL2 828 aa13.16□□□□□ -0.3
COL6A3-203ENST00000353578 FAM160B1Q5W0V3 765 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 CCNYL1Q8N7R7 359 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SNX31Q8N9S9 440 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 VPS33AQ96AX1 596 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PFDN2Q9UHV9 154 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 TSGA10IPQ3SY00 556 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 USHBP1Q8N6Y0 703 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 GDPD5Q8WTR4 605 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 MAD2L2Q9UI95 211 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF521Q96K83 1311 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 C5orf58C9J3I9 102 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SLC12A1Q13621 1099 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 RBM12BQ8IXT5 1001 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 GSPT2Q8IYD1 628 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PGM2Q96G03 612 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 H2AFY2Q9P0M6 372 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 VTI1BQ9UEU0 232 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SCAF8Q9UPN6 1271 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SNAP23O00161 211 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 EXOSC10Q01780 885 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZC2HC1CQ53FD0 456 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PNMA1Q8ND90 353 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZSCAN32Q9NX65 697 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 MSH3P20585 1137 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ARSEP51690 589 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 USP11P51784 963 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZNF544Q6NX49 715 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PROCA1Q8NCQ7 364 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 MMS19Q96T76 1030 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 GRIN2AQ12879 1464 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SLC4A1P02730 911 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PDHBP11177 359 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 FASP25445 335 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PTK7Q13308 1070 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 C6orf10Q5SRN2 563 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 BROXQ5VW32 411 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PNPT1Q8TCS8 783 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ARHGEF26Q96DR7 871 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZC3H7BQ9UGR2 993 aaKnown RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZBTB21Q9ULJ3 1066 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 ZSCAN9O15535 394 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 GP5P40197 560 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 C15orf59Q2T9L4 293 aaPredicted RBP13.15□□□□□ -0.3
COL6A3-203ENST00000353578 SETDB2Q96T68 719 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 PHTF1Q9UMS5 762 aa13.15□□□□□ -0.3
COL6A3-203ENST00000353578 XKRXQ6PP77 449 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 ADSSL1Q8N142 457 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 TUBGCP5Q96RT8 1024 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 COPRSQ9NQ92 184 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 VPS45Q9NRW7 570 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 GALNT8Q9NY28 637 aa13.15□□□□□ -0.31
COL6A3-203ENST00000353578 VPS4BO75351 444 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 ASS1P00966 412 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 GFPT1Q06210 699 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 MAPK7Q13164 816 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 FAM102BQ5T8I3 360 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 OTUD7BQ6GQQ9 843 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 CAPSLQ8WWF8 208 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 VPS11Q9H270 941 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 PLEKHA5Q9HAU0 1116 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 WDR35Q9P2L0 1181 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 FARP2O94887 1054 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 ANXA6P08133 673 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 PROSER2Q86WR7 435 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 CHCHD6Q9BRQ6 235 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 EFR3AQ14156 821 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 SAMD4BQ5PRF9 694 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 CNOT8Q9UFF9 292 aaKnown RBP13.14□□□□□ -0.31
COL6A3-203ENST00000353578 FAM92AA1XBS5 289 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 CPA3P15088 417 aa13.14□□□□□ -0.31
COL6A3-203ENST00000353578 ANXA11P50995 505 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms