RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SMARCAL1Q9NZC9 954 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 TSR3Q9UJK0 312 aaKnown RBP15.67■□□□□ 0.1
COL17A1-201ENST00000353479 TBC1D12O60347 775 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 MKRN4PQ13434 485 aaPredicted RBP15.67■□□□□ 0.1
COL17A1-201ENST00000353479 NAA25Q14CX7 972 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 RIOX2Q8IUF8 465 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 TTC8Q8TAM2 541 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 LRGUKQ96M69 825 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 SLITRK1Q96PX8 696 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 TRIM51Q9BSJ1 452 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 MMTAG2Q9BU76 263 aaKnown RBP15.67■□□□□ 0.1
COL17A1-201ENST00000353479 THAP2Q9H0W7 228 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 OLFML3Q9NRN5 406 aa15.67■□□□□ 0.1
COL17A1-201ENST00000353479 MMEP08473 750 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 HIF1AQ16665 826 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 IL31Q6EBC2 164 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 DDX53Q86TM3 631 aaKnown RBP15.66■□□□□ 0.1
COL17A1-201ENST00000353479 TAS1R2Q8TE23 839 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 PHLPP1O60346 1717 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 NVLO15381 856 aaKnown RBP15.66■□□□□ 0.1
COL17A1-201ENST00000353479 PHF2O75151 1096 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 SESN3P58005 492 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 P3H1Q32P28 736 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 ACAD10Q6JQN1 1059 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 DEFB128Q7Z7B8 93 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 DYRK4Q9NR20 520 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 AP1G2O75843 785 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 THP07101 528 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 C2CD6Q53TS8 623 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 KIAA0895Q8NCT3 520 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 SEPT8Q92599 483 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 MLXIPLQ9NP71 852 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 AAASQ9NRG9 546 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 FBXL5Q9UKA1 691 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 SH3BP1Q9Y3L3 701 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 APRTP07741 180 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 MAGOHP61326 146 aaKnown RBP15.66■□□□□ 0.1
COL17A1-201ENST00000353479 MAPRE1Q15691 268 aaKnown RBP15.66■□□□□ 0.1
COL17A1-201ENST00000353479 OSBPL8Q9BZF1 889 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 MUC3BQ9H195 1237 aa15.66■□□□□ 0.1
COL17A1-201ENST00000353479 CTIFO43310 598 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 TMEM119Q4V9L6 283 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 TMC2Q8TDI7 906 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 PURBQ96QR8 312 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 USP20Q9Y2K6 914 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ACO1P21399 889 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 MYL6P60660 151 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 FAM133BQ5BKY9 247 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ATXN7L3BQ96GX2 97 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 SNTG2Q9NY99 539 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ZWINTO95229 277 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 NR1H3Q13133 447 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 CRLF3Q8IUI8 442 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 WDR49Q8IV35 697 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ADGRF2Q8IZF7 708 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ACSF2Q96CM8 615 aaPredicted RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 CYP39A1Q9NYL5 469 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 C3orf70A6NLC5 250 aaPredicted RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 PMS1P54277 932 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 GYS2P54840 703 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 COPS2P61201 443 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 TTC30BQ8N4P2 665 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 SHCBP1Q8NEM2 672 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 RAB6BQ9NRW1 208 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 TRIM17Q9Y577 477 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 PQBP1O60828 265 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 CYP3A4P08684 503 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 MX2P20592 715 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 BEX3Q00994 111 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 CDR2Q01850 454 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 TDRD10Q5VZ19 366 aaKnown RBP15.65■□□□□ 0.1
COL17A1-201ENST00000353479 ASAP3Q8TDY4 903 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 FAM8A1Q9UBU6 413 aa15.65■□□□□ 0.1
COL17A1-201ENST00000353479 PHLDB3Q6NSJ2 640 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 NUDT18Q6ZVK8 323 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 PITPNM3Q9BZ71 974 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 PLAGL2Q9UPG8 496 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 A0A087X0B3 334 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 FSCN1Q16658 493 aaKnown RBP15.64■□□□□ 0.09
COL17A1-201ENST00000353479 FAM47EQ6ZV65 393 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 SLC13A1Q9BZW2 595 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 A0A087X0T9 212 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CCDC195A0A1B0GUA6 201 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CASTOR2A6NHX0 329 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 RPLP2P05387 115 aaKnown RBP15.64■□□□□ 0.09
COL17A1-201ENST00000353479 FAM228BP0C875 321 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CHSY1Q86X52 802 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 RNF135Q8IUD6 432 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 BTBD6Q96KE9 485 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 LTN1O94822 1766 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CCDC78A2IDD5 438 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CST8O60676 142 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 LRG1P02750 347 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 CYP11B1P15538 503 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 UBA1P22314 1058 aaKnown RBP15.64■□□□□ 0.09
COL17A1-201ENST00000353479 BYSLQ13895 437 aaKnown RBP15.64■□□□□ 0.09
COL17A1-201ENST00000353479 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.64■□□□□ 0.09
COL17A1-201ENST00000353479 SPATA18Q8TC71 538 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 ARHGEF26Q96DR7 871 aa15.64■□□□□ 0.09
COL17A1-201ENST00000353479 RSAD1Q9HA92 442 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms