RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 LPIN1Q14693 890 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 C9orf57Q5W0N0 161 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PPP1R2P3Q6NXS1 205 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 SYCE1Q8N0S2 351 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 USP38Q8NB14 1042 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 WHAMMQ8TF30 809 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 CYFIP2Q96F07 1278 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 ZSWIM1Q9BR11 485 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 BEGAINQ9BUH8 593 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 ABCB6Q9NP58 842 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PAK6Q9NQU5 681 aaPredicted RBP16.5■□□□□ 0.23
LIMS1-202ENST00000338045 KLK14Q9P0G3 267 aa16.5■□□□□ 0.23
LIMS1-202ENST00000338045 PIRO00625 290 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 BUB1BO60566 1050 aaPredicted RBP16.49■□□□□ 0.23
LIMS1-202ENST00000338045 SRGAP2O75044 1071 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 CILPO75339 1184 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 GHRP10912 638 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 RAD23BP54727 409 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 DSC3Q14574 896 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF394Q53GI3 561 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF618Q5T7W0 954 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 NAA35Q5VZE5 725 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 TRAF7Q6Q0C0 670 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 MCOLN2Q8IZK6 566 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 TTC39CQ8N584 583 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 OSBPL9Q96SU4 736 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 SEZ6LQ9BYH1 1024 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 UNC93B1Q9H1C4 597 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 PCDHGC3Q9UN70 934 aa16.49■□□□□ 0.23
LIMS1-202ENST00000338045 KBTBD13C9JR72 458 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 ARVCFO00192 962 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PPEF2O14830 753 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 NCK2O43639 380 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF623O75123 536 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CD52P31358 61 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TNNC1P63316 161 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PAK2Q13177 524 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 MON1BQ7L1V2 547 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 MRPL10Q7Z7H8 261 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PHF13Q86YI8 300 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 HACE1Q8IYU2 909 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TFAP2BQ92481 460 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TSC1Q92574 1164 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF653Q96CK0 615 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TRIM11Q96F44 468 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TRPV6Q9H1D0 765 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PDCL3Q9H2J4 239 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 AVENQ9NQS1 362 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 STXBP5LQ9Y2K9 1186 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 DNM1LO00429 736 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PTGESO14684 152 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 TLR3O15455 904 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 LSM8O95777 96 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 MYBL1P10243 752 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CKBP12277 381 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 ZSCAN20P17040 1043 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CDH5P33151 784 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 NSFP46459 744 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 NAA30Q147X3 362 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 RSRC2Q7L4I2 434 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 NT5DC3Q86UY8 548 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CREG2Q8IUH2 290 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CPA5Q8WXQ8 436 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 VCPIP1Q96JH7 1222 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PPP1R10Q96QC0 940 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 GOLPH3Q9H4A6 298 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 CTTNBP2NLQ9P2B4 639 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 UVRAGQ9P2Y5 699 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 PUF60Q9UHX1 559 aaKnown RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 BARX2Q9UMQ3 279 aaPredicted RBP16.48■□□□□ 0.23
LIMS1-202ENST00000338045 SCN1AP35498 2009 aa16.48■□□□□ 0.23
LIMS1-202ENST00000338045 FAM170AA1A519 330 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF185O15231 689 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 MGEA5O60502 916 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 LRPAP1P30533 357 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 CDK7P50613 346 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 RAB27AP51159 221 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 SOX4Q06945 474 aaPredicted RBP16.47■□□□□ 0.23
LIMS1-202ENST00000338045 DAAM2Q86T65 1068 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 SLC4A11Q8NBS3 891 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 GSTCDQ8NEC7 633 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 COG1Q8WTW3 980 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 TWNKQ96RR1 684 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF518BQ9C0D4 1074 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 ELOVL4Q9GZR5 314 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 RNF19AQ9NV58 838 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 WBP1LQ9NX94 342 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 HMGXB4Q9UGU5 601 aa16.47■□□□□ 0.23
LIMS1-202ENST00000338045 MEIS3P2A8K0S8 358 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 KIF4AO95239 1232 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 ITGA4P13612 1032 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 ATF7P17544 494 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-202ENST00000338045 PNPLA4P41247 253 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 CKAP4Q07065 602 aaKnown RBP16.46■□□□□ 0.23
LIMS1-202ENST00000338045 PTP4A2Q12974 167 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 C11orf63Q6NUN7 778 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 ZNF572Q7Z3I7 529 aaPredicted RBP16.46■□□□□ 0.23
LIMS1-202ENST00000338045 PASD1Q8IV76 773 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 TMEM176AQ96HP8 235 aa16.46■□□□□ 0.23
LIMS1-202ENST00000338045 CNOT8Q9UFF9 292 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms