RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 TRIP4Q15650 581 aaPredicted RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 SLFN12LQ6IEE8 588 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 TTC33Q6PID6 262 aaPredicted RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 SEMA6AQ9H2E6 1030 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 ZNF556Q9HAH1 456 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 INTS13Q9NVM9 706 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 KDM6BO15054 1643 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 PHF2O75151 1096 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 ACTR2P61160 394 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 RPS7P62081 194 aaKnown RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 FOXR1Q6PIV2 292 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP38-201ENST00000307017 DCUN1D1Q96GG9 259 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 DCUN1D5Q9BTE7 237 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 CYLDQ9NQC7 956 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 RUVBL2Q9Y230 463 aaKnown RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 CCDC22O60826 627 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 PAN2Q504Q3 1202 aaKnown RBP13.21□□□□□ -0.29
USP38-201ENST00000307017 SHCBP1Q8NEM2 672 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 LRRN4Q8WUT4 740 aa13.21□□□□□ -0.29
USP38-201ENST00000307017 E9PBE3 544 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 KLHL41O60662 606 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 RTN2O75298 545 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 CHRM3P20309 590 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 WEE1P30291 646 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 FLT3P36888 993 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 MTMR2Q13614 643 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 PLEKHA7Q6IQ23 1121 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 XPO6Q96QU8 1125 aaKnown RBP13.21□□□□□ -0.3
USP38-201ENST00000307017 RNF146Q9NTX7 359 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.21□□□□□ -0.3
USP38-201ENST00000307017 H2AFY2Q9P0M6 372 aaPredicted RBP13.21□□□□□ -0.3
USP38-201ENST00000307017 PMPCBO75439 489 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 TFRCP02786 760 aaKnown RBP13.21□□□□□ -0.3
USP38-201ENST00000307017 GOLGA7BQ2TAP0 167 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 SPATA2LQ8IUW3 424 aaPredicted RBP13.21□□□□□ -0.3
USP38-201ENST00000307017 MTBPQ96DY7 904 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 DONSONQ9NYP3 566 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 PITPNM2Q9BZ72 1349 aa13.21□□□□□ -0.3
USP38-201ENST00000307017 PEX1O43933 1283 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 HDDC2Q7Z4H3 204 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.2□□□□□ -0.3
USP38-201ENST00000307017 CACUL1Q86Y37 369 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 SPASTQ9UBP0 616 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 GTF2H1P32780 548 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 TRIM69Q86WT6 500 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 SPATA18Q8TC71 538 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 CCDC17Q96LX7 622 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 TBC1D23Q9NUY8 699 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 SNX13Q9Y5W8 968 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 ADGRL2O95490 1459 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 TRIM43BA6NCK2 446 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 NDUFB5O43674 189 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 NPTXRO95502 500 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 ATP6V1B2P21281 511 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 MICU2Q8IYU8 434 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 CERKQ8TCT0 537 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 WWP1Q9H0M0 922 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 TMEM245Q9H330 911 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 HEY2Q9UBP5 337 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 FAM32AQ9Y421 112 aaKnown RBP13.2□□□□□ -0.3
USP38-201ENST00000307017 EEF2KO00418 725 aaKnown RBP13.2□□□□□ -0.3
USP38-201ENST00000307017 PHKA2P46019 1235 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 CAPZA2P47755 286 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 THUMPD3Q9BV44 507 aaKnown RBP13.2□□□□□ -0.3
USP38-201ENST00000307017 MINPP1Q9UNW1 487 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 CPDO75976 1380 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 CFAP73A6NFT4 308 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 SAC3D1A6NKF1 404 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 RALAP11233 206 aa13.2□□□□□ -0.3
USP38-201ENST00000307017 NR5A2O00482 541 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 NDUFS3O75489 264 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 ZNF23P17027 643 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 PAX7P23759 505 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 MAGEA4P43358 317 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 ATPAF2Q8N5M1 289 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 MRPL4Q9BYD3 311 aaKnown RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 GCOM2Q9BZD3 368 aaPredicted RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 REXO4Q9GZR2 422 aaKnown RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 KIF24Q5T7B8 1368 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 CALCAP01258 141 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 PDGFRAP16234 1089 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 DSG1Q02413 1049 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 CPB2Q96IY4 423 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 MPP4Q96JB8 637 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 C10orf88Q9H8K7 445 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 USP20Q9Y2K6 914 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 DIS3Q9Y2L1 958 aaKnown RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 ZNF518AQ6AHZ1 1483 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 RSPH10B2B2RC85 870 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 FAM86B1E9PN63 330 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 RSPH10BP0C881 870 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 KDM4CQ9H3R0 1056 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 DEAF1O75398 565 aaPredicted RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 KRT39Q6A163 491 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 C11orf63Q6NUN7 778 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 PPP4R3CPQ6ZMV5 832 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 ARID3BQ8IVW6 561 aaPredicted RBP13.19□□□□□ -0.3
USP38-201ENST00000307017 THAP2Q9H0W7 228 aa13.19□□□□□ -0.3
USP38-201ENST00000307017 ELP3Q9H9T3 547 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms