RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 PCDHB4Q9Y5E5 795 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 TDRD15B5MCY1 1934 aaKnown RBP20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 SCN1AP35498 2009 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 B4GALT3O60512 393 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 KRT5P13647 590 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 IGFBP6P24592 240 aaPredicted RBP20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 CLCN1P35523 988 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 EPHB4P54760 987 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 CDH8P55286 799 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 TMEM240Q5SV17 173 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 DCLRE1AQ6PJP8 1040 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 TNS4Q8IZW8 715 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 C3orf58Q8NDZ4 430 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 RABGGTAQ92696 567 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 SDCBP2Q9H190 292 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 HAUS4Q9H6D7 363 aa20.23■□□□□ 0.83
PDLIM3-202ENST00000284770 CYP26A1O43174 497 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 B3GAT3O94766 335 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 PLEKP08567 350 aaPredicted RBP20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 CD58P19256 250 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 PAX3P23760 479 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 RAP1GAPP47736 663 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 TMEM270Q6UE05 265 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 LBHD1Q9BQE6 289 aaPredicted RBP20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 DESI2Q9BSY9 194 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 NHEJ1Q9H9Q4 299 aaPredicted RBP20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 PPP2R2CQ9Y2T4 447 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 ADGRG1Q9Y653 693 aa20.22■□□□□ 0.83
PDLIM3-202ENST00000284770 SSU72P8A0A1W2PR75 194 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 AARSP49588 968 aaKnown RBP eCLIP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 MAPK8IP2Q13387 824 aaPredicted RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 TDRD12Q587J7 1177 aaKnown RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 LIMS2Q7Z4I7 341 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 CCDC170Q8IYT3 715 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 LRRC43Q8N309 656 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 TTC39CQ8N584 583 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 NRDE2Q9H7Z3 1164 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 TRMT1Q9NXH9 659 aaKnown RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 DNAJB4Q9UDY4 337 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 EPN1Q9Y6I3 576 aaPredicted RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 ZBBXA8MT70 800 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 NDUFA10O95299 355 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 ZNF132P52740 706 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 PTK2Q05397 1052 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 INCA1Q0VD86 236 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 SOWAHAQ2M3V2 549 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 CD300LGQ6UXG3 332 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 DPH6Q7L8W6 267 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 RBBP8NLQ8NC74 664 aaPredicted RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 ZNF689Q96CS4 500 aaPredicted RBP20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 PPP1R13BQ96KQ4 1090 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 CCDC42Q96M95 316 aa20.21■□□□□ 0.83
PDLIM3-202ENST00000284770 CYB561D2O14569 222 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 HUS1O60921 280 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 CILPO75339 1184 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 TACC1O75410 805 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 EIF4A3P38919 411 aaKnown RBP20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 OR1G1P47890 313 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 BPIFB4P59827 614 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 TMCO2Q7Z6W1 182 aaPredicted RBP20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 SLC47A2Q86VL8 602 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 REXO1L1PQ8IX06 675 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 TOP6BLQ8N6T0 577 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 APPL2Q8NEU8 664 aa20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 BARX2Q9UMQ3 279 aaPredicted RBP20.2■□□□□ 0.82
PDLIM3-202ENST00000284770 TMEM189-UBE2V1I3L0A0 370 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 ALDH2P05091 517 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 FAM163BP0C2L3 166 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 CYP11B1P15538 503 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 ASTE1Q2TB18 679 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 PAN2Q504Q3 1202 aaKnown RBP20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 TIGD5Q53EQ6 642 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 ZNF571Q7Z3V5 609 aaPredicted RBP20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 EPS8L1Q8TE68 723 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 HERVK_113Q902F9 699 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 SENP8Q96LD8 212 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 TMEM175Q9BSA9 504 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 RC3H2Q9HBD1 1191 aaKnown RBP20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 ACP6Q9NPH0 428 aa20.19■□□□□ 0.82
PDLIM3-202ENST00000284770 CCP110O43303 1012 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 ZSCAN12O43309 604 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 KIF4AO95239 1232 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 CCDC175P0C221 793 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 FAM117BQ6P1L5 589 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 DSTYKQ6XUX3 929 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 ACRBPQ8NEB7 543 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 WHAMMQ8TF30 809 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 MRPL45Q9BRJ2 306 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 DEF6Q9H4E7 631 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 CXXC1Q9P0U4 656 aaPredicted RBP20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 L1RE1Q9UN81 338 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 REXO2Q9Y3B8 237 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 NR2E3Q9Y5X4 410 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 FNDC1Q4ZHG4 1894 aaPredicted RBP20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 EIF3CLB5ME19 914 aaKnown RBP20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 NRP1O14786 923 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 ITGB1P05556 798 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 ANXA13P27216 316 aa20.18■□□□□ 0.82
PDLIM3-202ENST00000284770 CYLC1P35663 651 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms