RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 LCP1P13796 627 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CENPCQ03188 943 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CUL2Q13617 745 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PRAMEF18Q5VWM3 479 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 LLGL2Q6P1M3 1020 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RNF135Q8IUD6 432 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 LRRC43Q8N309 656 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 AGR3Q8TD06 166 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 EXT2Q93063 718 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PHTF1Q9UMS5 762 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TRAF3IP3Q9Y228 551 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 AFF2P51816 1311 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TTC4O95801 387 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PPP3CAQ08209 521 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SURF1Q15526 300 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CATSPER4Q7RTX7 472 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CEP120Q8N960 986 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 FAM111AQ96PZ2 611 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PFDN4Q9NQP4 134 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 GPATCH2LQ9NWQ4 482 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PCDHB2Q9Y5E7 798 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SLIT3O75094 1523 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TCRBV7S2A1N4TA0A589 114 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 DGKIO75912 1065 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TBXAS1P24557 533 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RHBDL3P58872 404 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 AUHQ13825 339 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RABGAP1LQ5R372 815 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 LRGUKQ96M69 825 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 DNAJC18Q9H819 358 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 KIF9Q9HAQ2 790 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 BCAP29Q9UHQ4 241 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 STRIP2Q9ULQ0 834 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 NR2E1Q9Y466 385 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 KIF13AQ9H1H9 1805 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ABCC6O95255 1503 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CCDC78A2IDD5 438 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SHOX2O60902 331 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CTCFP49711 727 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 GABPAQ06546 454 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 Q3C1V9 767 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PSPC1Q8WXF1 523 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 KIF12Q96FN5 646 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TTYH3Q9C0H2 523 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 NINJ2Q9NZG7 142 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PSMC3IPQ9P2W1 217 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SMCHD1A6NHR9 2005 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ARID1BQ8NFD5 2236 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 IGSF9BQ9UPX0 1349 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PPP1R11O60927 126 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SLITRK3O94933 977 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 GYS1P13807 737 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PRKCEQ02156 737 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 GRM1Q13255 1194 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 MTMR2Q13614 643 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CHI3L2Q15782 390 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CKAP2Q8WWK9 683 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 KAT2BQ92831 832 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CIITAP33076 1130 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ARL4AP40617 200 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SLC20A2Q08357 652 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PRPSAP1Q14558 356 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 VPS72Q15906 364 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 TAF1BQ53T94 588 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 APOBEC3HQ6NTF7 200 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 NSUN6Q8TEA1 469 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 BCAS3Q9H6U6 928 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ANKRD63C9JTQ0 380 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 NKRFO15226 690 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PFDN1O60925 122 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 APRTP07741 180 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PDGFRBP09619 1106 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RBP3P10745 1247 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 HMGCS2P54868 508 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CYP24A1Q07973 514 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 STX3Q13277 289 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 EMC2Q15006 297 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 DBN1Q16643 649 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PREPLQ4J6C6 727 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 DUPD1Q68J44 220 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RASSF3Q86WH2 238 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ZSWIM2Q8NEG5 633 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ZBTB10Q96DT7 871 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 NSL1Q96IY1 281 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 WRNIP1Q96S55 665 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 VCX3AQ9NNX9 186 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 PCMTD2Q9NV79 361 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 KIF3CO14782 793 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 GPC4O75487 556 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CNGA2Q16280 664 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 CIAPIN1Q6FI81 312 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 C1orf186Q6ZWK4 172 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RBM46Q8TBY0 533 aaKnown RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SPATA18Q8TC71 538 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ABTB1Q969K4 478 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-201ENST00000249837 SENP7Q9BQF6 1050 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 WDR18Q9BV38 432 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 ADA2Q9NZK5 511 aa4.85□□□□□ -1.63
VPS13C-201ENST00000249837 RIPK2O43353 540 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms