RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 WDR72Q3MJ13 1102 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 STRIP1Q5VSL9 837 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 MFSD7Q6UXD7 560 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 ANO5Q75V66 913 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.12□□□□□ -0.31
NUP88-201ENST00000225696 MAP4K3Q8IVH8 894 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 TAB3Q8N5C8 712 aaPredicted RBP13.12□□□□□ -0.31
NUP88-201ENST00000225696 MAIP1Q8WWC4 291 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 FBXL18Q96ME1 805 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 KLF6Q99612 283 aaPredicted RBP13.12□□□□□ -0.31
NUP88-201ENST00000225696 UBN1Q9NPG3 1134 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 HOMER2Q9NSB8 354 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 SAE1Q9UBE0 346 aaPredicted RBP13.12□□□□□ -0.31
NUP88-201ENST00000225696 DCTN4Q9UJW0 460 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 ZNF536O15090 1300 aa13.12□□□□□ -0.31
NUP88-201ENST00000225696 GOLGA8RI6L899 631 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 PPP1R12AO14974 1030 aaPredicted RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 ATF7P17544 494 aaPredicted RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 KRT4P19013 534 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 ADRA1DP25100 572 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 RXRBP28702 533 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 GPX6P59796 221 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 NFX1Q12986 1120 aaKnown RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 KHDC1Q4VXA5 237 aaKnown RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 SLC27A3Q5K4L6 730 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 LVRNQ6Q4G3 990 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 RHOT1Q8IXI2 618 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 KATNAL2Q8IYT4 538 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 AGGF1Q8N302 714 aaeCLIP13.11□□□□□ -0.31
NUP88-201ENST00000225696 ZNF276Q8N554 614 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 RFWD2Q8NHY2 731 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 ZNF75CPQ92670 426 aaPredicted RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 CFAP57Q96MR6 1250 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 MRIQ9BWK5 157 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 ZNF148Q9UQR1 794 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 SPDYE5A6NIY4 337 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 DNALI1O14645 258 aaPredicted RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 PLSCR1O15162 318 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 POTEJP0CG39 1038 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 EIF2AK2P19525 551 aaKnown RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 HSD17B4P51659 736 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 GCNT1Q02742 428 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 PTP4A2Q12974 167 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 MSS51Q4VC12 460 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 DSTYKQ6XUX3 929 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 RGS9BPQ6ZS82 235 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 NLRP9Q7RTR0 991 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 NLRX1Q86UT6 975 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 CCDC125Q86Z20 511 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 LRRC8CQ8TDW0 803 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 ASAP3Q8TDY4 903 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 PTPRN2Q92932 1015 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 SMC6Q96SB8 1091 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 WDR83Q9BRX9 315 aaKnown RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 TMEM121Q9BTD3 319 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 APOBEC3GQ9HC16 384 aaKnown RBP13.11□□□□□ -0.31
NUP88-201ENST00000225696 ZFATQ9P243 1243 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 SERPINA10Q9UK55 444 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 PCDHB2Q9Y5E7 798 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 IVNS1ABPQ9Y6Y0 642 aa13.11□□□□□ -0.31
NUP88-201ENST00000225696 PCNTO95613 3336 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 C2orf71A6NGG8 1288 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TLR3O15455 904 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 PSTPIP1O43586 416 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 NPR1P16066 1061 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ACO1P21399 889 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 SSTR1P30872 391 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 SESN3P58005 492 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 NOMO3P69849 1222 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ZNF252P-AS1Q0IIN9 211 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 MTMR1Q13613 665 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 THEMIS2Q5TEJ8 643 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TAS1R3Q7RTX0 852 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ARMC2Q8NEN0 867 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TMC2Q8TDI7 906 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CLEC4DQ8WXI8 215 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 INPP5DQ92835 1189 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ZNF622Q969S3 477 aaKnown RBP eCLIP13.1□□□□□ -0.312e-6■■□□□ 12.3
NUP88-201ENST00000225696 SYT15Q9BQS2 421 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 EHMT1Q9H9B1 1298 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CCPG1Q9ULG6 757 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CLUHO75153 1309 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 F8VP50 259 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 HNRNPDLO14979 420 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 ATP4AP20648 1035 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 PDIA2Q13087 525 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 ZFYVE27Q5T4F4 411 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ANKRD22Q5VYY1 191 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TDRD10Q5VZ19 366 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 TMEM270Q6UE05 265 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 C15orf39Q6ZRI6 1047 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CLNKQ7Z7G1 428 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TDRPQ86YL5 185 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CPXCR1Q8N123 301 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 ENDOVQ8N8Q3 282 aaKnown RBP13.1□□□□□ -0.31
NUP88-201ENST00000225696 EXD1Q8NHP7 514 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CHURC1Q8WUH1 139 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 MASTLQ96GX5 879 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 TAAR1Q96RJ0 339 aa13.1□□□□□ -0.31
NUP88-201ENST00000225696 CADM1Q9BY67 442 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms