RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SSRP1Q08945 709 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 SLFN5Q08AF3 891 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 DYRK1AQ13627 763 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 RASGRF1Q13972 1273 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 NOMO1Q15155 1222 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 RBMS2Q15434 407 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 TRIM71Q2Q1W2 868 aaKnown RBP0.91□□□□□ -2.26
VPS35-212ENST00000640313 MST1LQ2TV78 715 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ZNF585BQ52M93 769 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 NOMO2Q5JPE7 1267 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 PLAC9Q5JTB6 97 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 C10orf25Q5T742 122 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 AFMIDQ63HM1 303 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 SHC4Q6S5L8 630 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CLNKQ7Z7G1 428 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 PIP4P1Q86T03 277 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CNGA4Q8IV77 575 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CAMKK1Q8N5S9 505 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 FITM2Q8N6M3 262 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 REPS2Q8NFH8 660 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 OR7D4Q8NG98 312 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 OR14C36Q8NHC7 312 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 WFIKKN2Q8TEU8 576 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 C5orf34Q96MH7 638 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CAMK1GQ96NX5 476 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ASB2Q96Q27 587 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 ALG8Q9BVK2 526 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CCDC113Q9H0I3 377 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 BCO1Q9HAY6 547 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 TRIM39Q9HCM9 518 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 TOMM22Q9NS69 142 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 POT1Q9NUX5 634 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 FBXO34Q9NWN3 711 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 MOCS1Q9NZB8 636 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 SH3BP4Q9P0V3 963 aa0.91□□□□□ -2.26
VPS35-212ENST00000640313 CBX4O00257 560 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 FCHO1O14526 889 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 NR2F6P10588 404 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ALAS1P13196 640 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 GSPT1P15170 499 aaKnown RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 PPP3CBP16298 524 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ATP5F1P24539 256 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 IL1R2P27930 398 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ZXDBP98169 803 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 GNL2Q13823 731 aaKnown RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 HLXQ14774 488 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 MTERF2Q49AM1 385 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 AARS2Q5JTZ9 985 aaKnown RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 GJC2Q5T442 439 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 GPR158Q5T848 1215 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 MIS18BP1Q6P0N0 1132 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ZNF529Q6P280 563 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ANKRD16Q6P6B7 361 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 SEM1Q6ZVN7 128 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 SLC29A4Q7RTT9 530 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ZNF551Q7Z340 670 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 TMPRSS9Q7Z410 1059 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 CHSY1Q86X52 802 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 B3GALNT2Q8NCR0 500 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 SSH1Q8WYL5 1049 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 TMEM125Q96AQ2 219 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 MEIS3Q99687 375 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ORAI3Q9BRQ5 295 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 ZPBPQ9BS86 351 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 SENP6Q9GZR1 1112 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 GZF1Q9H116 711 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 FOXP1Q9H334 677 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 PDGFCQ9NRA1 345 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 OXSMQ9NWU1 459 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 EHD3Q9NZN3 535 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 SELENONQ9NZV5 590 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 CTTNBP2NLQ9P2B4 639 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 PPP1R1BQ9UD71 204 aaPredicted RBP0.9□□□□□ -2.27
VPS35-212ENST00000640313 SLC23A1Q9UHI7 598 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 PFDN2Q9UHV9 154 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 MSRAQ9UJ68 235 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 MCM8Q9UJA3 840 aa0.9□□□□□ -2.27
VPS35-212ENST00000640313 A0A087WYN8 130 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 E7ENX8 843 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 H3BNX3 289 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 SMIM22K7EJ46 135 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 TEX33O43247 280 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 SUN1O94901 812 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 PLGP00747 810 aaPredicted RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 ASLP04424 464 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 EBLN1P0CF75 366 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 RAP2AP10114 183 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 PSG1P11464 419 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 FCER1AP12319 257 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 JUPP14923 745 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ZFXP17010 805 aaPredicted RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 CANXP27824 592 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 PCSK6P29122 969 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 GUCY1A2P33402 732 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 IGFALSP35858 605 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 ANXA11P50995 505 aaKnown RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 KRTAP10-8P60410 259 aa0.89□□□□□ -2.27
VPS35-212ENST00000640313 HOXA4Q00056 320 aaPredicted RBP0.89□□□□□ -2.27
VPS35-212ENST00000640313 TAP2Q03519 686 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms