RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PPP2R5EQ16537 467 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PFKFB3Q16875 520 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 POTEDQ86YR6 584 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HLA-CQ95604 372 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PPP1R2P1Q96PQ5 205 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CPVLQ9H3G5 476 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ABI3Q9P2A4 366 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TBC1D14Q9P2M4 693 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ORC6Q9Y5N6 252 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SCINQ9Y6U3 715 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KPNA3O00505 521 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 NVLO15381 856 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZBED1O96006 694 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SYPP08247 313 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HIST1H2AGP0C0S8 130 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HDCP19113 662 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HIST1H2ADP20671 130 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KRT20P35900 424 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 DCAF6Q58WW2 860 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HPDLQ96IR7 371 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HIST1H2AHQ96KK5 128 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PRRX2Q99811 253 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HIST1H2AJQ99878 128 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 H2AFJQ9BTM1 129 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 FAM207AQ9NSI2 230 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 LNPEPQ9UIQ6 1025 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SLC39A10Q9ULF5 831 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 FAF1Q9UNN5 650 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 LOC102724159A0A0B4J2E5 919 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PDZK1P1A8MUH7 402 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PRPF4O43172 522 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RPN1P04843 607 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SLC10A3P09131 477 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GUCA1AP43080 201 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GLUD2P49448 558 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TPI1P60174 286 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 POLR2LP62875 67 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GRIN1Q05586 938 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 FAM160A1Q05DH4 1040 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RCN2Q14257 317 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PWP2Q15269 919 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TTC19Q6DKK2 380 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 FBXL19Q6PCT2 694 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ABRAQ8N0Z2 381 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ENAHQ8N8S7 591 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KCNH7Q9NS40 1196 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 E9PCH4 1651 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SNX2O60749 519 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CTAGE8P0CG41 777 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZFXP17010 805 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SMARCA1P28370 1054 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HNRNPH2P55795 449 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SGSM1Q2NKQ1 1148 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ARL6IP4Q66PJ3 421 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ITPRIPL1Q6GPH6 555 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CTAGE4Q8IX94 777 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PDZD8Q8NEN9 1154 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 DNAJC1Q96KC8 554 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GBP5Q96PP8 586 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZCCHC2Q9C0B9 1178 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 UNC93B1Q9H1C4 597 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PLEKHA5Q9HAU0 1116 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TLK1Q9UKI8 766 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 FZD1Q9UP38 647 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SH2B2O14492 632 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 AP1G2O75843 785 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RASSF9O75901 435 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CHEK2O96017 543 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ACLYP53396 1101 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CDR2Q01850 454 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RETSATQ6NUM9 610 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KLHL35Q6PF15 583 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SLC24A5Q71RS6 500 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 MIB1Q86YT6 1006 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 MCUQ8NE86 351 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 P3H4Q92791 437 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZWILCHQ9H900 591 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 VPS28Q9UK41 221 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 USP20Q9Y2K6 914 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 HYOU1Q9Y4L1 999 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SNX14Q9Y5W7 946 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 USP17L7P0C7H9 530 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CPA1P15085 419 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PLCG1P19174 1290 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TUBB2AQ13885 445 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TFDP2Q14188 446 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GLRA4Q5JXX5 417 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 DARS2Q6PI48 645 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TMEM270Q6UE05 265 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RPRD1AQ96P16 312 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 IL12RB2Q99665 862 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TUBB2BQ9BVA1 445 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SLC45A1Q9Y2W3 748 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PKP3Q9Y446 797 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ANKRD12Q6UB98 2062 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 MYO1DO94832 1006 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF75DP51815 510 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 RCAN1P53805 252 aa5.28□□□□□ -1.56
SCN1A-218ENST00000640036 PSMD5Q16401 504 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms