RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 APOL5Q9BWW9 433 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 RBSNQ9H1K0 784 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 KCTD10Q9H3F6 313 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 KIAA1586Q9HCI6 787 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 PDE11AQ9HCR9 933 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLN3-261ENST00000637686 DPP3Q9NY33 737 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 CD207Q9UJ71 328 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 TRAF3IP3Q9Y228 551 aa10.66□□□□□ -0.7
CLN3-261ENST00000637686 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.66□□□□□ -0.7
CLN3-261ENST00000637686 PIRO00625 290 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 CALUO43852 315 aaPredicted RBP10.65□□□□□ -0.7
CLN3-261ENST00000637686 EXOC3O60645 756 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 ADH1AP07327 375 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 SRGAP2BP0DMP2 458 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 BMP1P13497 986 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 CLCN4P51793 760 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 TFAMQ00059 246 aaKnown RBP10.65□□□□□ -0.7
CLN3-261ENST00000637686 PSMD5Q16401 504 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 SNRNP35Q16560 246 aaKnown RBP10.65□□□□□ -0.7
CLN3-261ENST00000637686 ISM2Q6H9L7 571 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 PTCRAQ6ISU1 281 aaPredicted RBP10.65□□□□□ -0.7
CLN3-261ENST00000637686 ANKRD54Q6NXT1 300 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 SARM1Q6SZW1 724 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 PALB2Q86YC2 1186 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 NT5DC4Q86YG4 428 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 CACTINQ8WUQ7 758 aaKnown RBP10.65□□□□□ -0.7
CLN3-261ENST00000637686 CASP10Q92851 521 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 FAM84AQ96KN4 292 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 SUSD3Q96L08 255 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 CEP63Q96MT8 703 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 CLSTN3Q9BQT9 956 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 THAP9Q9H5L6 903 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 GRPEL1Q9HAV7 217 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 FNIP2Q9P278 1114 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 BRWD1Q9NSI6 2320 aa10.65□□□□□ -0.7
CLN3-261ENST00000637686 VWA8A3KMH1 1905 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 ANO9A1A5B4 782 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 GRXCR2A6NFK2 248 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SYN3O14994 580 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 ADAM12O43184 909 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 MBTPS2O43462 519 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 GNA14O95837 355 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 NR3C1P04150 777 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SPATA31D3P0C874 917 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 IL9P15248 144 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 ZNF18P17022 549 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 RPL13P26373 211 aaKnown RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 AARSP49588 968 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLN3-261ENST00000637686 LILRA4P59901 499 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 FKBP3Q00688 224 aaKnown RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 CREMQ03060 361 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 CYP24A1Q07973 514 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SURF1Q15526 300 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 PUS10Q3MIT2 529 aaKnown RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 VARS2Q5ST30 1063 aaKnown RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 LMBRD2Q68DH5 695 aaPredicted RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 SCARA3Q6AZY7 606 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 PDXDC1Q6P996 788 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SYCE2Q6PIF2 218 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 RSPO2Q6UXX9 243 aaPredicted RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 DSTYKQ6XUX3 929 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SPATA31D4Q6ZUB0 917 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 SLC9A9Q8IVB4 645 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 FAM114A1Q8IWE2 563 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 CSGALNACT2Q8N6G5 542 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 AOPEPQ8N6M6 819 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 C12orf76Q8N812 135 aaPredicted RBP10.64□□□□□ -0.71
CLN3-261ENST00000637686 C1orf127Q8N9H9 656 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 CCDC127Q96BQ5 260 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 MED15Q96RN5 788 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 MTMR12Q9C0I1 747 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 S1PR5Q9H228 398 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 DMAC2Q9NW81 257 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 MTRRQ9UBK8 725 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 PCDHB8Q9UN66 801 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 CTNND2Q9UQB3 1225 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 NFE2L3Q9Y4A8 694 aa10.64□□□□□ -0.71
CLN3-261ENST00000637686 PTPRJQ12913 1337 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TCF20Q9UGU0 1960 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 M0QZQ0 153 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 MAPK13O15264 365 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 SPTLC1O15269 473 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TGM5O43548 720 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 GLUD1P00367 558 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TNNC2P02585 160 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 ITGB3P05106 788 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 KRT19P08727 400 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TMEM191BP0C7N4 346 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 DLATP10515 647 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 HOXB8P17481 243 aaPredicted RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 EEF1GP26641 437 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 POLR2BP30876 1174 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 CASP4P49662 377 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 TAF6P49848 677 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 MARSP56192 900 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 MCCD1P59942 119 aaPredicted RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 ENPEPQ07075 957 aa10.63□□□□□ -0.71
CLN3-261ENST00000637686 SMAD4Q13485 552 aaKnown RBP10.63□□□□□ -0.71
CLN3-261ENST00000637686 MRPL58Q14197 206 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms