RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PAPD7Q5XG87 772 aaKnown RBP11.31□□□□□ -0.6
CLN3-248ENST00000636355 SLC47A2Q86VL8 602 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 RPUSD2Q8IZ73 545 aaKnown RBP11.31□□□□□ -0.6
CLN3-248ENST00000636355 SYCE1Q8N0S2 351 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 SLC35F6Q8N357 371 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 U2AF1L4Q8WU68 220 aaKnown RBP11.31□□□□□ -0.6
CLN3-248ENST00000636355 ZNF518BQ9C0D4 1074 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 UBN1Q9NPG3 1134 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 FAM105AQ9NUU6 356 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 SNTG2Q9NY99 539 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 LCMT1Q9UIC8 334 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 GTF3C4Q9UKN8 822 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 OGDHLQ9ULD0 1010 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 ST3GAL5Q9UNP4 418 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 MRFAP1Q9Y605 127 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 UMODL1Q5DID0 1318 aa11.31□□□□□ -0.6
CLN3-248ENST00000636355 TSC2P49815 1807 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 A0A0U1RQJ8 604 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 FANCGO15287 622 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 TLR3O15455 904 aaKnown RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 SGPL1O95470 568 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 CTSHP09668 335 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 FAM163BP0C2L3 166 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 PRLRP16471 622 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 ZSCAN20P17040 1043 aaPredicted RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 CHRNB2P17787 502 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 LRPAP1P30533 357 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 GNA15P30679 374 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 POLR2BP30876 1174 aaKnown RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 TNNC1P63316 161 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 AMPD2Q01433 879 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 BFSP2Q13515 415 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 DSC3Q14574 896 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 STILQ15468 1287 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 WHAMMP3Q1A5X7 153 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 CLEC16AQ2KHT3 1053 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 SPOPLQ6IQ16 392 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 TMEM270Q6UE05 265 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 MRPL10Q7Z7H8 261 aaKnown RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 SMG8Q8ND04 991 aaKnown RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 SLC20A1Q8WUM9 679 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 ATRIPQ8WXE1 791 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 WNT8BQ93098 351 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 HPDLQ96IR7 371 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 VCPIP1Q96JH7 1222 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 FTHL17Q9BXU8 183 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 AVENQ9NQS1 362 aaPredicted RBP11.3□□□□□ -0.6
CLN3-248ENST00000636355 CISHQ9NSE2 258 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 UVRAGQ9P2Y5 699 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 TRIM10Q9UDY6 481 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 KIAA1257Q9ULG3 409 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 PCDHGC3Q9UN70 934 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 GIT1Q9Y2X7 761 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 CEP83Q9Y592 693 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 PCDHB4Q9Y5E5 795 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 CAPN6Q9Y6Q1 641 aa11.3□□□□□ -0.6
CLN3-248ENST00000636355 CES2O00748 559 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 MED7O43513 233 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 CILPO75339 1184 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 CLSTN1O94985 981 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 CST3P01034 146 aaPredicted RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 MYCNP04198 464 aaPredicted RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 CYP1A1P04798 512 aaPredicted RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 KRT19P08727 400 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 COL6A1P12109 1028 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 CKBP12277 381 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 TCP1P17987 556 aaKnown RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 CDH5P33151 784 aaPredicted RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 CDK7P50613 346 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 GALCP54803 685 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 LPIN1Q14693 890 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 PKN2Q16513 984 aaKnown RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 WDR72Q3MJ13 1102 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 SV2CQ496J9 727 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 C1orf53Q5VUE5 145 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 C11orf63Q6NUN7 778 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 SPATA18Q8TC71 538 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 PGBD4Q96DM1 585 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 IRX2Q9BZI1 471 aaPredicted RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 TRMT13Q9NUP7 481 aaKnown RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 SEPT11Q9NVA2 429 aaKnown RBP11.29□□□□□ -0.6
CLN3-248ENST00000636355 GDAP2Q9NXN4 497 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 CDC23Q9UJX2 597 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 PADI3Q9ULW8 664 aa11.29□□□□□ -0.6
CLN3-248ENST00000636355 A0A0U1RQF3 1178 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 SMIM28A0A1B0GU29 152 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 CTIFO43310 598 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 URI1O94763 535 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 SLU7O95391 586 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 CYP1A2P05177 515 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 MMEP08473 750 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 UNGP13051 313 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 ITGA4P13612 1032 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 SELPP16109 830 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 NSFP46459 744 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 GSCP56915 257 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 NOMO3P69849 1222 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 GPC5P78333 572 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms