RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	PLEKHG4	Q58EX7	1191 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SRGAP1	Q7Z6B7	1085 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FBXL13	Q8NEE6	735 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DBF4B	Q8NFT6	615 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GDPD5	Q8WTR4	605 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	UBE2Q2	Q8WVN8	375 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	APBB2	Q92870	758 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MRPL38	Q96DV4	380 aa	Known RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CCDC42	Q96M95	316 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CGRRF1	Q99675	332 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PI4K2A	Q9BTU6	479 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	STK33	Q9BYT3	514 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LACRT	Q9GZZ8	138 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DEF6	Q9H4E7	631 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.23	□□□□□ -0.77	2e-6	■■■■■ 86.5
PDLIM5-223	ENST00000627587	RAB20	Q9NX57	234 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587		A0A087X0T9	212 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587		A0A1B0GUA9	196 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KIF2A	O00139	706 aa	Predicted RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ERLIN2	O94905	339 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FAM228B	P0C875	321 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TNNI1	P19237	187 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SOX5	P35711	763 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PTK2	Q05397	1052 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GFPT1	Q06210	699 aa	Predicted RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ASIC2	Q16515	512 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TIGD5	Q53EQ6	642 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF571	Q7Z3V5	609 aa	Predicted RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FMNL3	Q8IVF7	1028 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EFCAB13	Q8IY85	973 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	THNSL1	Q8IYQ7	743 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GJD3	Q8N144	294 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM130	Q8N3G9	435 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TATDN2	Q93075	761 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	OSMR	Q99650	979 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HAUS4	Q9H6D7	363 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LZTFL1	Q9NQ48	299 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PLSCR2	Q9NRY7	297 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NENF	Q9UMX5	172 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FOXN3	O00409	490 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GFPT2	O94808	682 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DARS	P14868	501 aa	Known RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	OSTN	P61366	133 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ETF1	P62495	437 aa	Known RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KRT83	P78385	493 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MBTPS1	Q14703	1052 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TCTN1	Q2MV58	587 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FAM117B	Q6P1L5	589 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TOP1MT	Q969P6	601 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	WDR24	Q96S15	920 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GCOM2	Q9BZD3	368 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	UBE2T	Q9NPD8	197 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MTUS1	Q9ULD2	1270 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GINS2	Q9Y248	185 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DUSP10	Q9Y6W6	482 aa		10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	COL4A4	P53420	1690 aa	Predicted RBP	10.22	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GRXCR2	A6NFK2	248 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRR33	A8MZF0	331 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587		H3BNC9	293 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	AKR1B10	O60218	316 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HLA-DRA	P01903	254 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TUBB4A	P04350	444 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RB1	P06400	928 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CXCL8	P10145	99 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MCF2	P10911	925 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EIF4B	P23588	611 aa	Known RBP	10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	STAT1	P42224	750 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NCBP1	Q09161	790 aa	Known RBP	10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KLHL30	Q0D2K2	578 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SPA17	Q15506	151 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SURF1	Q15526	300 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARHGAP44	Q17R89	818 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF662	Q6ZS27	426 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	WDR49	Q8IV35	697 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF710	Q8N1W2	664 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CXorf38	Q8TB03	319 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SHC3	Q92529	594 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARID3A	Q99856	593 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LMAN2L	Q9H0V9	348 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CXCL16	Q9H2A7	254 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	APOBEC3G	Q9HC16	384 aa	Known RBP	10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRKAG3	Q9UGI9	489 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RWDD3	Q9Y3V2	267 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	BZW2	Q9Y6E2	419 aa	Known RBP	10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SCN1A	P35498	2009 aa		10.21	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CST3	P01034	146 aa	Predicted RBP	10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	STAG3L1	P0CL83	205 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	FER	P16591	822 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	KCNA5	P22460	613 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	AP3M2	P53677	418 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	BIRC3	Q13489	604 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	GPM6B	Q13491	265 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.21	□□□□□ -0.78	5e-8	■■■■■ 41.6
PDLIM5-223	ENST00000627587	SLC18A3	Q16572	532 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	SLC10A6	Q3KNW5	377 aa		10.21	□□□□□ -0.78
PDLIM5-223	ENST00000627587	ARHGAP29	Q52LW3	1261 aa		10.21	□□□□□ -0.78

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