RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ZNF211Q13398 564 aaPredicted RBP23.51■■□□□ 1.35
PNKP-220ENST00000627232 ZNF667Q5HYK9 610 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 C17orf99Q6UX52 265 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 APBB1IPQ7Z5R6 666 aaPredicted RBP23.51■■□□□ 1.35
PNKP-220ENST00000627232 FAM71BQ8TC56 605 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 WHAMMQ8TF30 809 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 PPP1R16BQ96T49 567 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 ADPGKQ9BRR6 497 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 BCO2Q9BYV7 579 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 ZNF518BQ9C0D4 1074 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 VRTNQ9H8Y1 702 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 NMRK2Q9NPI5 230 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.51■■□□□ 1.35
PNKP-220ENST00000627232 SIX4Q9UIU6 781 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 PCDHGC3Q9UN70 934 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 SCINQ9Y6U3 715 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 RALGAPA2Q2PPJ7 1873 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 NRCAMQ92823 1304 aa23.51■■□□□ 1.35
PNKP-220ENST00000627232 CSDE1O75534 798 aaKnown RBP23.5■■□□□ 1.35
PNKP-220ENST00000627232 CFHP08603 1231 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 MARCKSL1P49006 195 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 RWDD2BP57060 319 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 INHBEP58166 350 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 PTP4A2Q12974 167 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 PCBP1Q15365 356 aaKnown RBP eCLIP23.5■■□□□ 1.35
PNKP-220ENST00000627232 DCAF4L1Q3SXM0 396 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 HSP90B2PQ58FF3 399 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 JADE1Q6IE81 842 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 PLEKHA7Q6IQ23 1121 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 CD302Q8IX05 232 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 PLVAPQ9BX97 442 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 SETD4Q9NVD3 440 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 NFU1Q9UMS0 254 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 Q9Y3F1 56 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 CITO14578 2027 aa23.5■■□□□ 1.35
PNKP-220ENST00000627232 SMIM35A0A1B0GVV1 85 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 ZSCAN5CA6NGD5 496 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 MYO1FO00160 1098 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 MEFVO15553 781 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 CDH5P33151 784 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 SLC10A6Q3KNW5 377 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 PRAMEF19Q5SWL8 479 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 RGMBQ6NW40 437 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 PASD1Q8IV76 773 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 C1orf127Q8N9H9 656 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 C11orf70Q9BRQ4 267 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 ADAMTS10Q9H324 1103 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 FLRT1Q9NZU1 646 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 MBLAC1A4D2B0 266 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 CALB1P05937 261 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 SMIM10L2AP0DMW4 78 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 SMIM10L2BP0DMW5 78 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 CD58P19256 250 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 MMP8P22894 467 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 RGS2P41220 211 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 GRM5P41594 1212 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 DHX34Q14147 1143 aaKnown RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 TLK2Q86UE8 772 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 IFNL1Q8IU54 200 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 MREGQ8N565 214 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 TMEM35BQ8NCS4 154 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 CXorf38Q8TB03 319 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 IFT81Q8WYA0 676 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 SEC14L1Q92503 715 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 KAT2BQ92831 832 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 ACAP3Q96P50 834 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 GCOM2Q9BZD3 368 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 FAM124BQ9H5Z6 455 aaPredicted RBP23.49■■□□□ 1.35
PNKP-220ENST00000627232 LCMT1Q9UIC8 334 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 C2CD2Q9Y426 696 aa23.49■■□□□ 1.35
PNKP-220ENST00000627232 ESYT3A0FGR9 886 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 FAM187AA6NFU0 413 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 PHF2O75151 1096 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 PROSCO94903 275 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 KRT19P08727 400 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 WEE2P0C1S8 567 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 TMEM132DQ14C87 1099 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 MMS22LQ6ZRQ5 1243 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 SOCS4Q8WXH5 440 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 CCDC102AQ96A19 550 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 GDAP1L1Q96MZ0 367 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 CYP3A43Q9HB55 503 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 AMACRQ9UHK6 382 aa23.48■■□□□ 1.35
PNKP-220ENST00000627232 STAU1O95793 577 aaKnown RBP23.47■■□□□ 1.35
PNKP-220ENST00000627232 SLC10A3P09131 477 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 PAEPP09466 180 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 PYGMP11217 842 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 EIF4BP23588 611 aaKnown RBP23.47■■□□□ 1.35
PNKP-220ENST00000627232 BRD2P25440 801 aaKnown RBP23.47■■□□□ 1.35
PNKP-220ENST00000627232 CPT1AP50416 773 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 MAMLD1Q13495 774 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 MFSD10Q14728 455 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 TERF2Q15554 542 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 ALS2CLQ60I27 953 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 ILDR2Q71H61 639 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 RUNDC3BQ96NL0 473 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 APBA2Q99767 749 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 RAB17Q9H0T7 212 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 FAM114A2Q9NRY5 505 aa23.47■■□□□ 1.35
PNKP-220ENST00000627232 PARVAQ9NVD7 372 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms