RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CLSTN1O94985 981 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 C4BPAP04003 597 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 IGFBP6P24592 240 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 IRS1P35568 1242 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 GCLMP48507 274 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 AARSP49588 968 aaKnown RBP eCLIP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 MCCD1P59942 119 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 ANO6Q4KMQ2 910 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 C1orf220Q5T0J3 134 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 TDRD10Q5VZ19 366 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 PDXDC1Q6P996 788 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 GPR65Q8IYL9 337 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 APPL2Q8NEU8 664 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 HPDLQ96IR7 371 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 CNOT6LQ96LI5 555 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 NSUN3Q9H649 340 aaKnown RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 TMEM8AQ9HCN3 771 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 MAGEC2Q9UBF1 373 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 PCDHB8Q9UN66 801 aa20.58■□□□□ 0.89
SQSTM1-216ENST00000626660 VWA8A3KMH1 1905 aa20.58■□□□□ 0.88
SQSTM1-216ENST00000626660 KPNA7A9QM74 516 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 C2CD2LO14523 706 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 ODC1P11926 461 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 FGFR3P22607 806 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 MARSP56192 900 aaKnown RBP20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 MYL5Q02045 173 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 DSG1Q02413 1049 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 CREMQ03060 361 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 PPP3CAQ08209 521 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 ZACNQ401N2 412 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 SV2AQ7L0J3 742 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 CREBRFQ8IUR6 639 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 MICALL1Q8N3F8 863 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 CXorf38Q8TB03 319 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 AUTS2Q8WXX7 1259 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 RIN2Q8WYP3 895 aaPredicted RBP20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 B3GALT6Q96L58 329 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 SENP8Q96LD8 212 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 CHST7Q9NS84 486 aa20.57■□□□□ 0.88
SQSTM1-216ENST00000626660 M0QZQ0 153 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 SPTLC1O15269 473 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 TKTP29401 623 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 ATICP31939 592 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 PIK3CAP42336 1068 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 MXI1P50539 228 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 NCOA4Q13772 614 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 PTPN14Q15678 1187 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 KIAA0319Q5VV43 1072 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 KRT39Q6A163 491 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 MRPL43Q8N983 215 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 PIK3R5Q8WYR1 880 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 SLC35C1Q96A29 364 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 EMILIN2Q9BXX0 1053 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 DSEQ9UL01 958 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 NFE2L3Q9Y4A8 694 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 PCDHGC5Q9Y5F6 944 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 IRAK3Q9Y616 596 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 UNC80Q8N2C7 3258 aa20.56■□□□□ 0.88
SQSTM1-216ENST00000626660 CUL9Q8IWT3 2517 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 C2orf71A6NGG8 1288 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 CYB561D2O14569 222 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 MTIF2P46199 727 aaKnown RBP20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 MYL6P60660 151 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 RTP2Q5QGT7 225 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 C15orf39Q6ZRI6 1047 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 ANKS3Q6ZW76 656 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 TRIM59Q8IWR1 403 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 MAFAQ8NHW3 353 aaPredicted RBP20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 FUCA2Q9BTY2 467 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 IMPG2Q9BZV3 1241 aa20.55■□□□□ 0.88
SQSTM1-216ENST00000626660 HIDE1A8MVS5 230 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 H7C4K7 107 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 HUS1O60921 280 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 N4BP1O75113 896 aaKnown RBP20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 VNN1O95497 513 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 CST3P01034 146 aaPredicted RBP20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 HLA-DRAP01903 254 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 TYMPP19971 482 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 PSMD5Q16401 504 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 ZNF699Q32M78 642 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 METTL23Q86XA0 190 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 CCDC150Q8NCX0 1101 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 TAF4BQ92750 862 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 BPIFA3Q9BQP9 254 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 TLE6Q9H808 572 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 GDAP2Q9NXN4 497 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 SNX9Q9Y5X1 595 aa20.54■□□□□ 0.88
SQSTM1-216ENST00000626660 FSD2A1L4K1 749 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 SMTNL1A8MU46 457 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 STAU1O95793 577 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 CAVIN2O95810 425 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 FMO5P49326 533 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 ZNF165P49910 485 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 TNNC1P63316 161 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 CETN1Q12798 172 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 SGSM1Q2NKQ1 1148 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 TCEAL5Q5H9L2 206 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 VARS2Q5ST30 1063 aaKnown RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms