RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 HOXA2O43364 376 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 EFCAB14O75071 495 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 MYCP01106 439 aaPredicted RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 THP07101 528 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 CCDC175P0C221 793 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 MSNP26038 577 aaKnown RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 POLR2BP30876 1174 aaKnown RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 CLCN1P35523 988 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 EIF4A3P38919 411 aaKnown RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.4
PDPN-211ENST00000617617 PTK2Q05397 1052 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 DPH6Q7L8W6 267 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 KAT5Q92993 513 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 CCDC42Q96M95 316 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 HAUS4Q9H6D7 363 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 KANSL3Q9P2N6 904 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 TUBGCP4Q9UGJ1 667 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 PTPRDP23468 1912 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 PATJQ8NI35 1801 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 BTNL10A8MVZ5 291 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 TACC1O75410 805 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 PAEPP09466 180 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 KIF11P52732 1056 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 ATN1P54259 1190 aaPredicted RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 PPP1R2P3Q6NXS1 205 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 TOGARAM2Q6ZUX3 1019 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 ZNF571Q7Z3V5 609 aaPredicted RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 VPS36Q86VN1 386 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 DDX1Q92499 740 aaKnown RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 AGAP1Q9UPQ3 857 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 PPP2R2CQ9Y2T4 447 aa12.58□□□□□ -0.4
PDPN-211ENST00000617617 REXO2Q9Y3B8 237 aaKnown RBP12.58□□□□□ -0.4
PDPN-211ENST00000617617 TMEM189-UBE2V1I3L0A0 370 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 SV2CQ496J9 727 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 SCARA3Q6AZY7 606 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 SPOPLQ6IQ16 392 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 REXO1L1PQ8IX06 675 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 EPS8L1Q8TE68 723 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 C18orf25Q96B23 403 aaPredicted RBP12.57□□□□□ -0.4
PDPN-211ENST00000617617 TMEM39AQ9NV64 488 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 DNAH12Q6ZR08 3092 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 MLH1P40692 756 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 SOX4Q06945 474 aaPredicted RBP12.57□□□□□ -0.4
PDPN-211ENST00000617617 DSC1Q08554 894 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 MTF1Q14872 753 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 TCEAL1Q15170 157 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 ARHGAP44Q17R89 818 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 NPAS4Q8IUM7 802 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 TOP6BLQ8N6T0 577 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 DBF4BQ8NFT6 615 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 FAM84AQ96KN4 292 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 RPS6KC1Q96S38 1066 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 AGPAT1Q99943 283 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 PLEKP08567 350 aaPredicted RBP12.57□□□□□ -0.4
PDPN-211ENST00000617617 GZMAP12544 262 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 MFSD5Q6N075 450 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 UNC93AQ86WB7 457 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 GAD1Q99259 594 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 APOL6Q9BWW8 343 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 MIOSQ9NXC5 875 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 KIAA1257Q9ULG3 409 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 ATP11BQ9Y2G3 1177 aa12.57□□□□□ -0.4
PDPN-211ENST00000617617 NLRC5Q86WI3 1866 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 ABHD14A-ACY1A0A1B0GW23 586 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 ZNF263O14978 683 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CILPO75339 1184 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 BAIAP3O94812 1187 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CYP11B1P15538 503 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 TAF6P49848 677 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CDR2Q01850 454 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 TUSC3Q13454 348 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 UPP1Q16831 310 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 TCTN1Q2MV58 587 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CLLU1OSQ5K130 101 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 TRIM72Q6ZMU5 477 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 PPP1R13BQ96KQ4 1090 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CALR3Q96L12 384 aaKnown RBP12.56□□□□□ -0.4
PDPN-211ENST00000617617 ARID3AQ99856 593 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 LUC7LQ9NQ29 371 aaKnown RBP12.56□□□□□ -0.4
PDPN-211ENST00000617617 CISHQ9NSE2 258 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 KLK14Q9P0G3 267 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.56□□□□□ -0.4
PDPN-211ENST00000617617 TRIM43BA6NCK2 446 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 MEIS3P2A8K0S8 358 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 CHRNB2P17787 502 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 NYAP1Q6ZVC0 841 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 TRIM43Q96BQ3 446 aaPredicted RBP12.56□□□□□ -0.4
PDPN-211ENST00000617617 TSGA10Q9BZW7 698 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 PCDHGC3Q9UN70 934 aa12.56□□□□□ -0.4
PDPN-211ENST00000617617 R3HCC1Q9Y3T6 440 aaKnown RBP12.56□□□□□ -0.4
PDPN-211ENST00000617617 DDX3XO00571 662 aaKnown RBP eCLIP12.55□□□□□ -0.4
PDPN-211ENST00000617617 KRT19P08727 400 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 CYP2C18P33260 490 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 VAV2P52735 878 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 TNNC1P63316 161 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 GLB1LQ6UWU2 654 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 RPUSD2Q8IZ73 545 aaKnown RBP12.55□□□□□ -0.4
PDPN-211ENST00000617617 LNX1Q8TBB1 728 aaPredicted RBP12.55□□□□□ -0.4
PDPN-211ENST00000617617 URGCPQ8TCY9 931 aa12.55□□□□□ -0.4
PDPN-211ENST00000617617 LPPQ93052 612 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms