RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TMEM8AQ9HCN3 771 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 RNF14Q9UBS8 474 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 LAMA3Q16787 3333 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 UBOX5O94941 541 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 ATF7P17544 494 aaPredicted RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 NSFP46459 744 aaKnown RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 C10orf76Q5T2E6 689 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 USP37Q86T82 979 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 CCDC26Q8TAB7 109 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 PBKQ96KB5 322 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 TRIM33Q9UPN9 1127 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 GOLGA6L10A0A0M3HER8 536 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 GSTTP1A0A1W2PQM5 241 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 FOXO6A8MYZ6 492 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 UBAP2Q5T6F2 1119 aaKnown RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 UBL4BQ8N7F7 174 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 HELQQ8TDG4 1101 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 CDHR1Q96JP9 859 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 STRA6Q9BX79 667 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 DAAM1Q9Y4D1 1078 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 SLC26A4O43511 780 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 ZNF286BP0CG31 522 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 DYNLT1P63172 113 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 IFI35P80217 286 aaPredicted RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 QSER1Q2KHR3 1735 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 LACTB2Q53H82 288 aaPredicted RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 CYP4A22Q5TCH4 519 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 SEL1L2Q5TEA6 688 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 FAM43BQ6ZT52 329 aaPredicted RBP15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 ERICH1Q86X53 443 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 TMEM192Q8IY95 271 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 C10orf88Q9H8K7 445 aa15.37■□□□□ 0.05
SHROOM1-208ENST00000617339 IGF2BP3O00425 579 aaKnown RBP eCLIP15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 VTNP04004 478 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 EMC10Q5UCC4 262 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 NIPA1Q7RTP0 329 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 INTS9Q9NV88 658 aaKnown RBP15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 NOP53Q9NZM5 478 aaKnown RBP15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 ASIC3Q9UHC3 531 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 CYP2B6P20813 491 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 MYL6P60660 151 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 CUL1Q13616 776 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 CAPSQ13938 189 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 CPB2Q96IY4 423 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 ECT2Q9H8V3 914 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 NUB1Q9Y5A7 615 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 GNA15P30679 374 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 TRPM8Q7Z2W7 1104 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 TMC3Q7Z5M5 1100 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 ERO1BQ86YB8 467 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 SLC9A9Q8IVB4 645 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 FAM129AQ9BZQ8 928 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 VPS33BQ9H267 617 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 ADAM22Q9P0K1 906 aa15.36■□□□□ 0.05
SHROOM1-208ENST00000617339 IQCA1LA6NCM1 817 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 SLC8A3P57103 927 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 CCNA1P78396 465 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 GRIK3Q13003 919 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 FOXR2Q6PJQ5 311 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 LBX2Q6XYB7 198 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 MAGEC3Q8TD91 643 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 SEPT1Q8WYJ6 367 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 PCYT2Q99447 389 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 APOBEC3GQ9HC16 384 aaKnown RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 SUCLA2Q9P2R7 463 aaPredicted RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 SYNGAP1Q96PV0 1343 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 KRT10P13645 584 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 MTMR3Q13615 1198 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 NCOA4Q13772 614 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 AGBL2Q5U5Z8 902 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 CCDC137Q6PK04 289 aaKnown RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 SLC17A8Q8NDX2 589 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 TTC16Q8NEE8 873 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 FBXO25Q8TCJ0 367 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 KLHL29Q96CT2 875 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 CPA4Q9UI42 421 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 C5orf60A6NFR6 353 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 FARP2O94887 1054 aaPredicted RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 NOP14P78316 857 aaKnown RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 FAM160B1Q5W0V3 765 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 GSTA5Q7RTV2 222 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 FAM71AQ8IYT1 594 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 RNPEPQ9H4A4 650 aa15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 CPSF2Q9P2I0 782 aaKnown RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 TTC7AQ9ULT0 858 aaPredicted RBP15.35■□□□□ 0.05
SHROOM1-208ENST00000617339 GREB1LQ9C091 1923 aaPredicted RBP15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ZNF157P51786 506 aaPredicted RBP15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 KIF22Q14807 665 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ERMARDQ5T6L9 678 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 EFCAB12Q6NXP0 572 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 DCUN1D2Q6PH85 259 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 RGS16O15492 202 aaPredicted RBP15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 PIAS1O75925 651 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 STBD1O95210 358 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ACSL3O95573 720 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 IFNB1P01574 187 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 PDHA1P08559 390 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 TMEM191BP0C7N4 346 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 ALCAMQ13740 583 aa15.34■□□□□ 0.05
SHROOM1-208ENST00000617339 WDR72Q3MJ13 1102 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms